Gene detail information of Glyur000653s00025443


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G36990.18.00E-40heat shock factor 4
NRXP_007155926.12.29E-56hypothetical protein PHAVU_003G244000g [Phaseolus vulgaris]
Swissprottr|P22335|HSF24_SOLPE2.00E-56Heat shock factor protein HSF24
trEMBLtr|V7CF68|V7CF68_PHAVU9.00E-57Uncharacterized protein {ECO:0000313|EMBL:ESW27920.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00653112830118330+


Gene family

Gene familysubfamily
Transcription Factors FamilyHSF


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009408  response to heat


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

"


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000653s00025443.1PF00447.12HSF_DNA-bind10931.20E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.222
SRR1783600control6.598
SRR1783602moderate drought stress9.236
SRR1811619moderate drought stress9.130

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.182
DRR006520Root Summer glycyrrhizin high producing strain2.163
DRR006521Root Winter glycyrrhizin high producing strain3.570
DRR006522Root Winter glycyrrhizin high producing strain3.428
DRR006523Root Summer glycyrrhizin low producing strain5.392
DRR006524Root Summer glycyrrhizin low producing strain4.155
DRR006525Leaf Summer glycyrrhizin high producing strain1.312
DRR006526Leaf Summer glycyrrhizin high producing strain1.335

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)28.902
SRR2868004Drought Stress (root)36.307
SRR2967015Control (root)31.166

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf7.261
SRR9715740Leaf4.513
SRR9715741Leaf3.995
SRR9715739Root27.251
SRR9715742Root22.793
SRR9715743Root18.762

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.595
SRR8749028MeJA induced 9h38.606
SRR8749029MeJA induced 9h76.573
SRR8749030Uninduced51.861
SRR8749031Uninduced64.331
SRR8749032Uninduced93.013

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root32.557
SRR8400027Control - Root24.254

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved