Gene detail

Gene detail information of Glyur000653s00025438

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45207.2	1.00E-47	Remorin family protein
NR	XP_004509141.1	0	PREDICTED: uncharacterized protein LOC101503251 [Cicer arietinum]
trEMBL	tr\|G8A348\|G8A348_MEDTR	0	Putative uncharacterized protein {ECO:0000313\|EMBL:AES85886.1}

Sequence

Transcript Sequence

>Glyur000653s00025438.1
ATGGAACTCTCTAACTCACCGAGTACTGTCATGAAGAAGGGTTCATCCTCTTCTTCCACTCAGAACCTGGGTTCTTTCCCAAGTCCAGGGGCACCATATTATAGAGATAGAACTAGAAACCTTGGGAACAACAAAGGGTGGAGTTCAGAAAGAGTATCAAAGCCTGCAAGCAGCAGCAGCAGCAGAAGGCACACTATGTCTGGGTTGACACCGTTCAGTGGTGGAAGAACAATGCCTTCAAAATGGGATGAAGCTGAGAGATGGATTTGTAGCCCAGTTTCATCAGCATATGCTGATAGCAGAAGTTCACATGTACAACTTCAGCGCCGACCCAAGTCAATAAGTGGCCCAATTAATGTGCCTCCTGGAGTGGCTTTCTACTCGAATTATTCTCCTGCAGTTCCACTGCGCCAAGGTTTGGTTGTGAGGAACTTAATGGTGGGTTCCCCTTTCTCAACAGGAGTGTTGGCACCGGTTGCTGTTTCCGTTCACCATTATGACGACGCACATGATCATGATGCTACTGTTTTTGGTTATGACATTGACAACGGAATACAATATTCTAGTCCTGTGCTCGACGAGAACTGTGTAGCACATTCATCAATGTCCACTGTTGCACCCACGTGTTCTCAACTGCCCTGTGACTGTGACCCATCATCATCTCCAATTTATCAAGATGAGAAGCATGATGGAATGAAGAATGAGGACACCGTGTTGTCTCTTGTCCCAAGATGTGATAAAGGTACCCAAATGAGCCCTACAGAAACCGAGAATGATGAACATTCATCTCCAAGATCTTCTGCCACTTCGGTCATGGATCAAGAAGAATGGCATTCTCCTAAATNAGAGGTCAGAGATGTGCAGGTTGACAGTCAAGCTACTGTTATGAGGGGGTCCAAGAGGCATGCTGCCAGATTGACCAAAAAAGACTCGCTGCACAGCAAAGACTTGAGAGAGAATAGTGATGAAGCCCAAGTTTCATGTNGGGATATTGAAGAGTCGACCTTGGACACTTCCAAGTTACAGAGAGAGGAAGCCAAAATCATTGCGTGGGAGAATTTGCAGAAAGCAAAGGCCGAAGCTGCAATACGGAAACTTGAGATGAAATTGGAAAAGAAGAGATCCTCATCAATAGATAAGATTCTAAAAAAGCTGAGAAGATCACAGCTGAAAGCAGATAATATGAGAAACTTAATACCTGTACAACAGGACCATCATATTTCCAAGATTTGCAAAGTATTTTCATTCCCCAAATATGCCCAGATGTGGTCTCCAAGCAGCTGCTTCAGCAGCCATGCCGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00653	83115	85541	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000653s00025438.1	PF03763.8	Remorin_C	320	409	1.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.278
SRR1783600	control	2.667
SRR1783602	moderate drought stress	2.450
SRR1811619	moderate drought stress	2.823

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.915
DRR006520	Root Summer glycyrrhizin high producing strain	2.071
DRR006521	Root Winter glycyrrhizin high producing strain	4.065
DRR006522	Root Winter glycyrrhizin high producing strain	4.320
DRR006523	Root Summer glycyrrhizin low producing strain	0.803
DRR006524	Root Summer glycyrrhizin low producing strain	0.863
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.221
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.699

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.389
SRR2868004	Drought Stress (root)	4.618
SRR2967015	Control (root)	3.477

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.736
SRR9715740	Leaf	1.922
SRR9715741	Leaf	3.093
SRR9715739	Root	0.127
SRR9715742	Root	0.587
SRR9715743	Root	0.911

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.999
SRR8749028	MeJA induced 9h	1.348
SRR8749029	MeJA induced 9h	2.694
SRR8749030	Uninduced	3.552
SRR8749031	Uninduced	4.656
SRR8749032	Uninduced	4.904

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.918
SRR8400027	Control - Root	11.364