Gene detail

Gene detail information of Glyur000653s00025435.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67080.1	1.00E-96	mitogen-activated protein kinase kinase kinase 19
NR	KEH16526.1	0	MAP3K-like kinase [Medicago truncatula]
COG	YP_003270925.1	6.00E-24	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|O22042\|M3K3_ARATH	1.00E-46	Mitogen-activated protein kinase kinase kinase 3
trEMBL	tr\|A0A072TH41\|A0A072TH41_MEDTR	0	MAP3K-like kinase {ECO:0000313\|EMBL:KEH16526.1}

Sequence

Transcript Sequence

>Glyur000653s00025435.1
ATGGATTGGGTGCGAGGAGAATCCGTTGGTCGAGGAAGCTTTGCCACGGTGAGTTTAGCAATACCCACAGGCGGCACTTCCACTCAGTTCCCATCTCCGACCGTCGTTAAAACCTCCGAGGTTTCAACCTCGTCTTCGCTAAAGAACGAGAAACAAGTTCTCGATCGCCTAGGCTCGTGCCCGCGAATCATTCGTTGCTTCGGCGACGACAAAACATTCGAGAATGGCGAGGAGTGCTACAACCTATTCCTCGAATACGCCGGCGGCGGGAGTCTCGCAGATCATCTCAAATTCCACGGTGGCCGGATTCCCGAGCCCCACATTCGCCGTTACACGAGGTCAATCATCGAGGGTCTTAATCATATTCACCGGAACGGGTTCGTCCACTGCGACATAAAGCTCCAAAACATCCTCGTATTCGACGACGGGGAAGTAAAAATCGCCGATTTCGGTCTCGCGAAGGAAACAGGGGCGGAACAGAGTGAGGGAAAGAGGTTCGAGTGCAGGGGAACCCCGCTTTTCATGTCACCGGAGTCGGTGAACGACGGCGAGCACGAGTCGCCGGCNGATATATGGGCTCTGGGGTGTGCGGTGGTGGAGATGGTGACCGGGAAACCGGCGTGGACTGTGGAAAAGGGTTCAAGCATGTGGTCGTTGTTGCTTCGAATTGGGGTGGGAGAAGAATCGCCGGTNATACCCGAGGAGTTGTCGAAAGAGGGGAAGGATTTTCTGAACAAGTGTTTCGTGAAGGATCCCAGAAAGAGATGGACCGCAGAGATGCTTCTGAAGCACCCTTTCGTGGACGATGACGACGTCGTTTCGATTAAGCAGTTCAATGAGTCACCAAGAAGCCACTTTGATTTCCCTGACTGGGTTCCGAGTTCACCGGAATCTGAAGAGCCATCATCGTGTCAATGGGATTTTGATTCGTCTAGTGTTTGTTCGGCAGTGGACCGCCTCCGGCAACTCGTGACAGTTCAGAGGCTGCCGGAAATTTGGACGGAATCAGATAGTTGGACTAGTGTTAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00653	46668	47699	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.4.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000653s00025435.1	PF00069.20	Pkinase	5	267	1.20E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.435
SRR1783600	control	1.373
SRR1783602	moderate drought stress	2.492
SRR1811619	moderate drought stress	2.708

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.795
DRR006520	Root Summer glycyrrhizin high producing strain	42.195
DRR006521	Root Winter glycyrrhizin high producing strain	0.108
DRR006522	Root Winter glycyrrhizin high producing strain	0.106
DRR006523	Root Summer glycyrrhizin low producing strain	12.829
DRR006524	Root Summer glycyrrhizin low producing strain	11.883
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.765
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.877

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.362
SRR2868004	Drought Stress (root)	12.799
SRR2967015	Control (root)	22.777

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.684
SRR9715740	Leaf	36.525
SRR9715741	Leaf	50.683
SRR9715739	Root	27.728
SRR9715742	Root	97.424
SRR9715743	Root	76.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.940
SRR8749028	MeJA induced 9h	6.691
SRR8749029	MeJA induced 9h	6.942
SRR8749030	Uninduced	2.253
SRR8749031	Uninduced	0.891
SRR8749032	Uninduced	3.895

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.553
SRR8400027	Control - Root	21.717