Gene detail information of Glyur000653s00025434 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42860.1 | 9.00E-57 | |
| NR | XP_003525811.2 | 0 | PREDICTED: uncharacterized protein LOC100798888 [Glycine max] |
| trEMBL | tr|I1K248|I1K248_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G19620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00653 | 40310 | 41636 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000653s00025434.1 | PF03168.8 | LEA_2 | 199 | 295 | 4.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.206 |
| SRR1783600 | control | 8.360 |
| SRR1783602 | moderate drought stress | 6.667 |
| SRR1811619 | moderate drought stress | 7.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.428 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.589 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.810 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.712 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.604 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.644 |
| SRR2868004 | Drought Stress (root) | 4.462 |
| SRR2967015 | Control (root) | 4.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.789 |
| SRR9715740 | Leaf | 0.266 |
| SRR9715741 | Leaf | 0.355 |
| SRR9715739 | Root | 4.816 |
| SRR9715742 | Root | 4.843 |
| SRR9715743 | Root | 5.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.214 |
| SRR8749028 | MeJA induced 9h | 14.821 |
| SRR8749029 | MeJA induced 9h | 20.768 |
| SRR8749030 | Uninduced | 7.014 |
| SRR8749031 | Uninduced | 5.086 |
| SRR8749032 | Uninduced | 7.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.512 |
| SRR8400027 | Control - Root | 9.264 |