Gene detail

Gene detail information of Glyur000653s00025428.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34050.1	2.00E-76	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	KHN42093.1	2.51E-98	Caffeoyl-CoA O-methyltransferase 2 [Glycine soja]
COG	YP_007072655.1	2.00E-46	caffeoyl-CoA O-methyltransferase [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|O49499\|CAMT4_ARATH	2.00E-95	Caffeoyl-CoA O-methyltransferase 1
trEMBL	tr\|I1LHD1\|I1LHD1_SOYBN	9.00E-99	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G05800.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00653	146	891	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00588	E2.1.1.104	EC:2.1.1.104	Phenylalanine metabolism	map00360
			Phenylpropanoid biosynthesis	map00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Flavonoid biosynthesis	map00941

Gene Ontology

molecular_function
GO:0008171 O-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000653s00025428.1	PF01596.12	Methyltransf_3	1	174	2.70E-73

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.010
SRR1783600	control	0.067
SRR1783602	moderate drought stress	0.071
SRR1811619	moderate drought stress	0.000

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.677

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.240
SRR2868004	Drought Stress (root)	0.825
SRR2967015	Control (root)	1.119

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.240
SRR9715740	Leaf	0.128
SRR9715741	Leaf	0.843
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.121

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.087
SRR8400027	Control - Root	0.200