Gene detail information of Glyur000652s00019425.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21890.1 | 3.00E-21 | B-box type zinc finger family protein |
| NR | NP_001236343.1 | 2.93E-61 | uncharacterized protein LOC100500322 [Glycine max] |
| Swissprot | tr|Q9LJB7|BBX32_ARATH | 5.00E-14 | B-box zinc finger protein 32 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|C6T1D4|C6T1D4_SOYBN | 1.00E-61 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU15362.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00652 | 50797 | 51153 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000652s00019425.1 | PF00643.19 | zf-B_box | 30 | 60 | 4.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.683 |
| SRR1783600 | control | 0.721 |
| SRR1783602 | moderate drought stress | 0.731 |
| SRR1811619 | moderate drought stress | 0.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.120 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.981 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.313 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.302 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.043 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.076 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.687 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.228 |
| SRR2868004 | Drought Stress (root) | 15.587 |
| SRR2967015 | Control (root) | 5.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.446 |
| SRR9715740 | Leaf | 12.279 |
| SRR9715741 | Leaf | 11.186 |
| SRR9715739 | Root | 2.031 |
| SRR9715742 | Root | 9.991 |
| SRR9715743 | Root | 6.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.199 |
| SRR8749028 | MeJA induced 9h | 0.328 |
| SRR8749029 | MeJA induced 9h | 0.999 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.376 |
| SRR8400027 | Control - Root | 5.728 |