Gene detail

Gene detail information of Glyur000651s00026838

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02370.1	2.00E-172	ATP binding microtubule motor family protein
NR	XP_007140315.1	0	hypothetical protein PHAVU_008G101900g [Phaseolus vulgaris]
Swissprot	tr\|F9W301\|KPSS1_ORYSJ	9.00E-42	Kinesin-1-like protein PSS1 {ECO:0000303\|PubMed:21282525, ECO:0000312\|EMBL:DAA34941.1}
trEMBL	tr\|K7L1G4\|K7L1G4_SOYBN	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000651s00026838.1
CTCAAACACTGATTTACTTCATTGCACCCACCCACCCCCCACATTAATCTTCCACAGTTTTCTCATCAAACTGTCTCAACTCAAATATACAACAATGGCTGCTACCCTCGGCTGCTGCAGCACCCCTAAGAAACTCTCCAACAACAACAACAACCCCATTTCAGTTCCCTCCAATGTCAGGGTCATCGTCAGGGTCAGACCCTTCCTTCCTCACGAGAGGNTCTCAGCAACAAACCATCACCCAGTCTCGTGTATCTCCGTCCTCGACCAAGGTTATGATGAAGAAGTAGCTGTTTATCTCAAAGACCCACAATCCAGTCGTAATGAGTGCTACCAGTTGGACTCTTTTTTTGACCGAGAAGACAACAACGTGGGNCAGATATTCTACACAGAAGTAAGCCCCATGATACCGGGAATCTTCAACGGTTGCAACGCCACCGTGTTTGCTTATGGGGCTACTGGCAGTGGGAAGACATACACCATGCAGGGAACTGAGGAGCAACCTGGCTTGATGCCACTGGCAATGTCGATGATCCTGTCTATTTGCCAAAGCACTGGCAGCACAGCACAGATCTCATACTATGAGGTCTACATGGACCGATGTTATGACCTCTTGGAGGTCAAAGCAAAGGAGATTTCAGTTTGGGAGGACAAAGATGGTCAAATTCACCTCAGGGGACTATCTCAGGTCCCCGTGAACACCATGTCTGAATTCCAAGAGGTTTTCTCCTGTGGAGTTCAGAGACGCAAAGTTGCACACACAGGCCTCAATGATGTCTCCAGTAGGAGTCATGGAGTGCTTGTNATATCTGTATCCACTCCTTCTGATGGTGCTGGTGGTCCTGTATGTGGAAAAAGGACTTGCAATGAAGGGATTCGTCTCCAAGAGAGTGCCAAGATAAACCAGTCCTTGTTTGCACTGTCAAATGTGATATATGCATTGAACAACAACAAACCAAGAGTACCCTACAGAGAAAGCAAGTTGACCCGGATATTGCAGGACTCTCTAGGGGGAACTAGCCGTGCACTGATGGTTGCTTGCCTGAATCCAGGAGAATACCAGGAATCTGTTCATACTGTTAGTTTGGCTGCTCGATCAAGGCACGTCTCTAATTTTGTACCTTCAGCTCATAAACAAGAGACCCCGAAAGTTAAAGTTGACATGGNAGCCAAACTGAGAGCCTGGCTAGAATCAAAAGGCAAAACAAAGAGCTCGCAAAGACTTGGAGCATTTAATTCTCCACTTGTCATAAAAACTCCCAGTTCCATCATTACCTCTGCTAAGAGATCCGTCACTTTTAATAATTCAGTTAAGGGTGGAAGAACCGCCACCAACCAAGATGCTCAACATACAAATGAAAGGGCCTTTGCTGTTGCTTTTAGAAATCTACTAGATGGTGAAACTGGTTTTGATTCTTGCAAGGAGAACATACATTGTGGTGTTAAGGACAATAATAACACTGAGCACGAGGACAATAAGGCTGCATGGGACTCNTACAAAAATGTACCTGTTGAGCCATTGAGCAAAGGGGTGAACTCTCCAATTATTAGAAATGAAAAAGATGAAGTACAAAGTCCTTTAAGAAAAGCCCTTTCCCCCATCAACATCAATGGTAATCAAAAGTCCCTTGAGGCTTTGTCTTTGACACAAACACCTTTAACTGCAACCTGCTCCACTAATAAAGGGTTANAAAAGCATGACACTCCACTTGACAAATTCAGTACACGAAGTTCTACACTGAAGAACTGTCTAGTCCAAGAATACATTGATTTTTTAAATAATGCAAGCAGAGAGGAACTACTAGAGTTAAAGGGCATAGGAGAGAAAATGGCAGAATACATAATAGACCTTAGAGAAGAAAGCCCACTAAAATCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00651	83615	88029	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003677 DNA binding

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000651s00026838.1	PF00225.18	Kinesin	33	338	7.80E-74
Glyur000651s00026838.1	PF00633.18	HHH	560	584	1.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.141
SRR1783600	control	2.178
SRR1783602	moderate drought stress	1.191
SRR1811619	moderate drought stress	1.218

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.520
DRR006520	Root Summer glycyrrhizin high producing strain	3.404
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.266
DRR006524	Root Summer glycyrrhizin low producing strain	1.304
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.367
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.392

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.311
SRR2868004	Drought Stress (root)	3.730
SRR2967015	Control (root)	4.843

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.692
SRR9715740	Leaf	0.017
SRR9715741	Leaf	0.479
SRR9715739	Root	0.256
SRR9715742	Root	0.894
SRR9715743	Root	0.690

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.236
SRR8749028	MeJA induced 9h	2.042
SRR8749029	MeJA induced 9h	1.587
SRR8749030	Uninduced	0.067
SRR8749031	Uninduced	0.231
SRR8749032	Uninduced	0.423

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.126
SRR8400027	Control - Root	6.429