Gene detail

Gene detail information of Glyur000651s00026833.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37630.1	1.00E-93	myb-like HTH transcriptional regulator family protein
NR	XP_007140319.1	0	hypothetical protein PHAVU_008G102300g [Phaseolus vulgaris]
Swissprot	tr\|O80931\|AS1_ARATH	8.00E-155	Transcription factor AS1
trEMBL	tr\|V7B638\|V7B638_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12313.1}

Sequence

Transcript Sequence

>Glyur000651s00026833.1
ATGAAGGATAGGCAACGGTGGAGGGTGGAAGAGGATGCTTTACTACGCGCATACGTCAAACAGTATGGTCCTAGGGAATGGAACCTCGTGTCTCAGCGCATGAACACACCTCTCAATAGGGATGCCAAATCATGCTTAGAAAGGTGGAAGAACTANCTCAAGCCTGGTATTAAGAAAGGATCTCTCACTGAAGAAGAGCAGCGCCTTGTCATAAGCCTCCAAGCGAAACATGGAAACAAATGGAAGAAAATCGCTGCGCAAGTCCCCGGCCGCACTGCTAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAAAGAGAGACAAAAGGGATTAACAGAACCGTTGACCCGATCAACGATAGCAAGTACGAGCACATACTGGAGAGTTTCGCGGAGAAGCTAGTGAAAGAGCGCCCGTCGCCATCATATGTTATGGCTGCCTCCAACAGTTCTTTTATGCATGCCGATGCACCGGCCCCTGCACCAGCACTGCTTCCTTCTTGGCTTTCCAATTCCAACAGCACCACGCCCGTCAGGCCACCTTCCCCATCNGTGACGCTAAGCCTTTCTCCCTCGACAGTGGCAGCGCCGCCTCCTCCATGGATGCAACCGGTACGAGGGCCGCCGGAGAATGCGCCTCTTGTCCTGGGAAACATAGCTCCCCCNCATGGGGCTGTTCTAGCTTTTGGCGAGAATATGCTCATGTCCGAGTTGGTGGATTGTTGTAAAGAGTTGGAGGAAGTGCATCATGCCTTGGCAGCACACAAGAAAGAGGCGGCATGGCGGTTAAGCCGGGTGGAGCTGCAGCTGGAGTCCGAGAAGGCGAGCCGAAGGAGGGAGAAGATGGAGGAAATCGAAGCGAAGATCAAGGCTTTGAGGGAGGAGCAGGCAGCTGCTTTGGATAGAATCGAAGCGGAATACAGGGAACAGTTAGCAGGGCTGAGAAGGGATGCAGAAAGCAAAGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAGCACTTGCGCCTTACCAAGTTTCTAGAACAAGTTGGATGCAGATCAAGGCTTGCTGAACCAAATGGGAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00651	35580	36656	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000651s00026833.1	PF13921.1	Myb_DNA-bind_6	7	68	1.00E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	71.241
SRR1783600	control	72.211
SRR1783602	moderate drought stress	102.070
SRR1811619	moderate drought stress	101.379

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	120.122
DRR006520	Root Summer glycyrrhizin high producing strain	118.409
DRR006521	Root Winter glycyrrhizin high producing strain	4.752
DRR006522	Root Winter glycyrrhizin high producing strain	4.825
DRR006523	Root Summer glycyrrhizin low producing strain	136.397
DRR006524	Root Summer glycyrrhizin low producing strain	137.645
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.734
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.716

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.152
SRR2868004	Drought Stress (root)	17.738
SRR2967015	Control (root)	21.131

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.963
SRR9715740	Leaf	31.903
SRR9715741	Leaf	34.059
SRR9715739	Root	82.865
SRR9715742	Root	56.902
SRR9715743	Root	71.314

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.402
SRR8749028	MeJA induced 9h	1.342
SRR8749029	MeJA induced 9h	2.215
SRR8749030	Uninduced	0.983
SRR8749031	Uninduced	0.044
SRR8749032	Uninduced	0.541

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.722
SRR8400027	Control - Root	64.232