Gene detail

Gene detail information of Glyur000650s00035856

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65670.2	6.00E-91	indole-3-acetic acid inducible 9
NR	XP_004490496.1	2.60E-164	PREDICTED: auxin-responsive protein IAA9-like [Cicer arietinum]
Swissprot	tr\|Q38827\|IAA9_ARATH	3.00E-113	Auxin-responsive protein IAA9
trEMBL	tr\|G7K618\|G7K618_MEDTR	5.00E-162	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000650s00035856.1
TAATTTTTTAATGCATGGTGTCATGCTTTTGTTCCTTTGTGACAAATGGAGGGTTCTTAGTTCTGTTTCGTCTTCTTTCCCTTCTTTCTCAACCAAAATCTCAACACACTCTTCTTCTTCACCCTTCTGATCTTGCTGATTCTTCAGGGGATGAGGAAGGTGAAAGCAATGTCACTAATTTGTTGGTTTCTTCCTCAGCCACCATGGAAAGTGTGTGCCTGAATGGTTCAAAACTGAAAGAGCTGAACTACATCTATATGGGATTATCACCTGATTGTTCATCAGTGGATAGTTCAGTTCCAAATATTCCATCATCTTTCNCAGATGAGACCAAAAGTAATCTGAACCTCAAAGCTACTGAGCTTAGACTGGGGCTACCAGGATCACAGTCTCCTGAAAGAGATTCAACTCAGTTTGATGAAAAGCCTCTCTTCCCTTTGCATCCTGAAACAGATGATCACCATTCCTCATCAAAGCCTGCTGCTGTTTTGGGTAACAAAAGAGGGTTCTCAGATGCCATGAATAATGAGTTCTCAGAGCAAGATAAAGCCAAAGAAATAGCATCAGCCAAGGTTGGCCTTGAGGGGACTCATGGTGTCACTGAAAGCAGACCAAGTCTCAATGGTTCTGCAAAGAATAACAACAATAGCATTGTACCAGCTACCAAGGCACAGGTTGTGGGTTGGCCTCCTATAAGATCATTTAGGAAAAATTCATTGACCACTGCTTCAAAGAACAATGAAGAGGTTGATGGAAAAGTGGGGTCTGGTGCAGTGTTTGTGAAGGTCAGCATGGATGGTGCTCCTTATTTAAGGAAAGTAGACTTGAAGAATTACACTGCATATGCTGAACTATCTTCTGCTCTCGAGAAAATGTTCAGCTGTTTTACCATAGGTCAATGTGGATCTCATGGAAATCTAGGCAGCAGGGAGATGCTGAATGAAACAAAGCTGAAGGATCTGCTTCATGGGTCAGAATATGTTCTTACATATGAGGATAAAGATGGTGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGATACATGCAGGAGGCTAAGGATCATGAAGGGCTCTGATGCCATTGGTCTAGCACCCAGAGCTGTTGAAAAAAGTAAAAGCAGGAACTAGGCAGCTTCAATTAATGGTCACACTCTATCCATCTAAACTGTCTATGGGGTTATAAAATATGCTTCTGGGCTATGTGGTGGGGTGAGCAAATCAAGGACCATAATGGCTTCGAGGCAAGAACTACACATGAAGCTGCCTTAATCAAATGATATTATTTACTATGTCTGTCTGCATTTTCTGTTTTCAGTAAGCTTTTTTTTTTTTCCTTTTTTTTTTCTTCATGATTGTCAAAGTTTATAAAACCCCGAAGACCTGTCTGTGGGGGTTCTTATATTCTATGTGCTAAAGTTCTTGTTTGTGAAGGATTTGTAGTCTGTGAATTGCATCATCCCTTATGCATGTTTGTGGCTTTGTGTGATTTTAAAAAAAAAAAAGTAAGTGTTGTAACTTAATATGGAATTCACCTTTTACAGTTTTTGTTGCCTTTTGTTACCCTTTTGTCAATGTCAATGTCAATGTCAATGTCAATGTCATTCACCTGTTTAAAAGCAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00650	58415	62819	+

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000650s00035856.1	PF02309.11	AUX_IAA	110	366	4.20E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	107.016
SRR1783600	control	106.847
SRR1783602	moderate drought stress	90.294
SRR1811619	moderate drought stress	88.418

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	145.880
DRR006520	Root Summer glycyrrhizin high producing strain	145.662
DRR006521	Root Winter glycyrrhizin high producing strain	38.164
DRR006522	Root Winter glycyrrhizin high producing strain	36.695
DRR006523	Root Summer glycyrrhizin low producing strain	110.520
DRR006524	Root Summer glycyrrhizin low producing strain	110.441
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.446
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.300

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	217.935
SRR2868004	Drought Stress (root)	255.841
SRR2967015	Control (root)	174.382

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.713
SRR9715740	Leaf	55.676
SRR9715741	Leaf	81.674
SRR9715739	Root	80.874
SRR9715742	Root	138.057
SRR9715743	Root	122.800

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	103.680
SRR8749028	MeJA induced 9h	93.969
SRR8749029	MeJA induced 9h	60.141
SRR8749030	Uninduced	48.584
SRR8749031	Uninduced	32.562
SRR8749032	Uninduced	41.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	256.198
SRR8400027	Control - Root	253.458