Gene detail information of Glyur000650s00035855 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65660.1 | 1.00E-10 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_007141309.1 | 2.22E-55 | hypothetical protein PHAVU_008G184900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LSK9|Y5566_ARATH | 3.00E-24 | Uncharacterized protein At5g65660 |
| trEMBL | tr|V7B8W9|V7B8W9_PHAVU | 8.00E-56 | Uncharacterized protein {ECO:0000313|EMBL:ESW13303.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00650 | 37899 | 39273 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 87.740 |
| SRR1783600 | control | 87.893 |
| SRR1783602 | moderate drought stress | 45.700 |
| SRR1811619 | moderate drought stress | 45.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.761 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.227 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.162 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.631 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.615 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.951 |
| SRR2868004 | Drought Stress (root) | 45.706 |
| SRR2967015 | Control (root) | 37.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.532 |
| SRR9715740 | Leaf | 2.335 |
| SRR9715741 | Leaf | 2.134 |
| SRR9715739 | Root | 12.716 |
| SRR9715742 | Root | 17.891 |
| SRR9715743 | Root | 15.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 83.360 |
| SRR8400027 | Control - Root | 81.329 |