Gene detail information of Glyur000649s00025296 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52580.1 | 3.00E-62 | Ribosomal protein S11 family protein |
| NR | NP_001238010.1 | 2.46E-103 | uncharacterized protein LOC100499665 [Glycine max] |
| COG | YP_004484470.1 | 3.00E-49 | 30S ribosomal protein S11 [Methanotorris igneus Kol 5] |
| Swissprot | tr|O22584|RS14_LUPLU | 2.00E-92 | 40S ribosomal protein S14 |
| trEMBL | tr|C6SV94|C6SV94_SOYBN | 9.00E-104 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G40110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00649 | 115823 | 118317 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000649s00025296.1 | PF00411.14 | Ribosomal_S11 | 28 | 146 | 1.40E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 72.020 |
| SRR1783600 | control | 72.083 |
| SRR1783602 | moderate drought stress | 50.008 |
| SRR1811619 | moderate drought stress | 49.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 130.323 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 128.249 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 84.156 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 82.158 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 113.290 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 112.833 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.374 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 368.456 |
| SRR2868004 | Drought Stress (root) | 246.608 |
| SRR2967015 | Control (root) | 247.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 154.524 |
| SRR9715740 | Leaf | 140.673 |
| SRR9715741 | Leaf | 134.617 |
| SRR9715739 | Root | 307.134 |
| SRR9715742 | Root | 181.353 |
| SRR9715743 | Root | 206.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 255.197 |
| SRR8749028 | MeJA induced 9h | 108.388 |
| SRR8749029 | MeJA induced 9h | 179.023 |
| SRR8749030 | Uninduced | 33.706 |
| SRR8749031 | Uninduced | 30.671 |
| SRR8749032 | Uninduced | 50.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 262.737 |
| SRR8400027 | Control - Root | 208.015 |