Gene detail

Gene detail information of Glyur000649s00025286

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46250.1	2.00E-83	RNA-binding protein
NR	XP_003593945.1	0	La-related protein [Medicago truncatula]
Swissprot	tr\|Q94A38\|LRP6A_ARATH	9.00E-116	La-related protein 6A
trEMBL	tr\|G7IPX8\|G7IPX8_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK41252.1}

Sequence

Transcript Sequence

>Glyur000649s00025286.1
GATTTGAGCACCGTGGTAGTGAGAGAGAGAGACCCAAGCGAGGCGTGAACAACGGAAATACTTTTTCCCCCTATATAAGGATCTGAACTGAGAAATTAGAAGACTGTGGAGAGAGAAAGAGCAGAAAACAAAGGGCGCGGGGAAATTTCTTAGAGAGAGAGAGAGAGAGATAGACTATCCTCTCTCCTCAATGGAAAGCGGCGAACAGGGTCTCCTTTCNGCCACCACCACCCCCGCCGGCGCCGATCCCACCGCTTCACCTCCTCCACTCGGTGATCCCGTTAGTGNTCCCGATCCCGCTGCTGGCCCGGACGATGTCGCGGAGCCTGAAATTCATGCTCTGATTTCAGACGAAGAGCACGATCACCATCATGATCACGACCACGATCATGATGAAGATCACGACCACGAGCATGACCACCATGATGAGGACCAGGACCGCGATCACGTGGCTGAGACCGCTGTTTCCTTGGATGATCTCAAGCTCAAAATCATTAAGCAGGTGGAGTATTATTTCAGCGATGAAAATCTGCCCACTGATAAGTATCTATCGGGTTTCGTCAAGAGGAACAAGGAAGGGTTTGTTCCTATATCAGTAATTGCTTCTTTTAGAAAAATGAAGAAGCTCACTCGAGACCATTCATTTATTGTTGCTGCCCTGAAGGAATCTTCACTGCTTGTTGTTAGTGGTGATGGGAAAAGGGTCAAGAGGCTCAATCCACTTCGTTTCAATGAATATAGAGATCATAAGTTATATACTGTTTTGGTAGAGAATTTGCCAGAGGACCATTCAAAGGAGAACATTCGGCAAATATTCCATGAAGCTGGAAATATAAAGAGGGTATCCATTCATGACCCGCGTCCTACTGCAGAGTCTGCAAAACATATCAAGCAAGAAAAATTTATTAGTAGTAAGTTACATGCTCTTGTGGAATATGAGACTATTGAGGCTGCTGAGAAAGCTGTGNCTATGTTAAATAATGATCAAGACTGGAGAAATGGCATGCGGGTTAAACTTCTCAAGCGAATGGGGAAGCATGAACACAAAAAACAAGCTTGGAAGGGATCTAATGCTGAGAAGAATAGCTCAGGCCATACATCTGAACAAACTGGAGATGAGGATAATCATGGCTCAAATGAGCATCATGAACATACACATGAGGAAGAGGATGGAGAACATTTGTCAAGGGATAAATGTGGGCAGAGGTATACAAAACAAGGAAGATCAAGAAAACATAAATATCGTGCCACAAATGGAATGGGCCATGGAAATACACCATCTGCTCATGCTGCTGAGGCATCAAANCCACCTCCTGGACCAAGAATGCCAGATGGAACACGGGGCTTTGCAATTGGACGAGGTCGGCCTCCTGTCCCTGCTTCGAATTAGCAAGATTTGAAACCACCCAGCGGATTTGTATTTAACATTATTTTCAGTTGTTTTAGTGATGTACTAGNTTCAACTTGGGTTCCAATGTGTGTGCTTGAGTCAACATTCAAGGGTTTGTTGGACTGTTAAATTTTGTGACTCAATCTTGTGAAAGCAAGTGTTGGTGGTGGAGCACATAGCCATTTTCAGATTATTAGGCTGGGANAGATAATTTATATTTGGTAATCCTCACCATACGAGGAATCTGTGTAGCAAAAAATCCTAATGAGAATTATGTTAATGGGGATGAAAGCTGTGTGTTTGATATTTGATTGAAATATTCTAGATCGACATTATAGTGGTCCCCTCACCGCTGTCGTTGAAACAGGTCTGGCTGGAAATTTCACGAACTGATCCCAAACGTAGGATANAGTAACAAGGCAAACCAAACACTAATCCTTATTGTGCTTTTGAACATAGGGTTTGACNTGCCTTTCGTTAAGATGTGTTGTGACGATGAAAATGGTTCAGGAGAATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00649	84995	89882	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

cellular_component

GO:0005634 nucleus

GO:0030529 intracellular ribonucleoprotein complex

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000649s00025286.1	PF05383.12	La	101	160	7.60E-27
Glyur000649s00025286.1	PF14259.1	RRM_6	191	266	4.20E-06
Glyur000649s00025286.2	PF05383.12	La	11	43	1.10E-07
Glyur000649s00025286.2	PF00076.17	RRM_1	74	148	4.80E-08
Glyur000649s00025286.3	PF05383.12	La	101	131	2.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	201.505
SRR1783600	control	199.004
SRR1783602	moderate drought stress	184.553
SRR1811619	moderate drought stress	181.969

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	346.771
DRR006520	Root Summer glycyrrhizin high producing strain	345.186
DRR006521	Root Winter glycyrrhizin high producing strain	402.748
DRR006522	Root Winter glycyrrhizin high producing strain	394.080
DRR006523	Root Summer glycyrrhizin low producing strain	388.123
DRR006524	Root Summer glycyrrhizin low producing strain	385.218
DRR006525	Leaf Summer glycyrrhizin high producing strain	62.055
DRR006526	Leaf Summer glycyrrhizin high producing strain	63.009

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	216.449
SRR2868004	Drought Stress (root)	280.150
SRR2967015	Control (root)	258.806

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	111.295
SRR9715740	Leaf	97.450
SRR9715741	Leaf	135.773
SRR9715739	Root	58.461
SRR9715742	Root	172.868
SRR9715743	Root	160.975

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	505.804
SRR8749028	MeJA induced 9h	539.264
SRR8749029	MeJA induced 9h	443.793
SRR8749030	Uninduced	538.804
SRR8749031	Uninduced	504.273
SRR8749032	Uninduced	496.497

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	338.834
SRR8400027	Control - Root	333.647