Gene detail information of Glyur000649s00025285 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29980.1 | 4.00E-169 | Protein of unknown function, DUF642 |
| NR | XP_003593942.1 | 0 | Glutamate-gated kainate-type ion channel receptor subunit GluR5 [Medicago truncatula] |
| trEMBL | tr|G7IPX6|G7IPX6_MEDTR | 0 | DUF642 family protein {ECO:0000313|EMBL:AES64194.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00649 | 76395 | 82485 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000649s00025285.1 | PF04862.7 | DUF642 | 31 | 187 | 3.90E-60 |
| Glyur000649s00025285.1 | PF04862.7 | DUF642 | 199 | 365 | 7.80E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 304.311 |
| SRR1783600 | control | 305.787 |
| SRR1783602 | moderate drought stress | 153.026 |
| SRR1811619 | moderate drought stress | 153.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 143.645 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 142.954 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.402 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.042 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 122.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 121.429 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 86.937 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 87.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 82.001 |
| SRR2868004 | Drought Stress (root) | 54.626 |
| SRR2967015 | Control (root) | 66.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 69.881 |
| SRR9715740 | Leaf | 42.334 |
| SRR9715741 | Leaf | 28.930 |
| SRR9715739 | Root | 534.899 |
| SRR9715742 | Root | 124.660 |
| SRR9715743 | Root | 202.889 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 299.043 |
| SRR8749028 | MeJA induced 9h | 80.105 |
| SRR8749029 | MeJA induced 9h | 113.968 |
| SRR8749030 | Uninduced | 2.807 |
| SRR8749031 | Uninduced | 1.010 |
| SRR8749032 | Uninduced | 7.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 259.042 |
| SRR8400027 | Control - Root | 211.017 |