Gene detail

Gene detail information of Glyur000649s00025282

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46240.1	0	potassium channel in Arabidopsis thaliana 1
NR	XP_004486026.1	0	PREDICTED: potassium channel KAT1-like isoform X1 [Cicer arietinum]
COG	YP_005071944.1	4.00E-35	cyclic nucleotide-binding protein [Arthrospira platensis NIES-39]
Swissprot	tr\|Q39128\|KAT1_ARATH	0	Potassium channel KAT1
trEMBL	tr\|G7IPW9\|G7IPW9_MEDTR	0	Inwardly rectifying potassium channel subunit {ECO:0000313\|EMBL:AES64187.2}

Sequence

Transcript Sequence

>Glyur000649s00025282.1
ATGTCAGTTTCCTGTGCCAAAAACTTCTTCCAGAGGTTCTGGGTAGATGAATTCCAAATGGGAAGTCTTGCCCATAGCAGCTTCATGTCTAGTGATCTTCTCCCATCTCTTGGAGCAAGAATAAACCAGGAAACTAAACTGCAAAAATACATAATCTCCCCTTTCAATCCTCGGTATAGGGCTTGGGAGATGTTACTGGTTGTTGTAGTCATATACTCAGCTTGGATTTGCCCGTTTGAGTTTGCCTTTCTGCCTTATAAGCAAGATGCACTATTCATCATAGACAACATTGTCAATGGCTTCTTTGCCATTGACATAGTGCTTACATTCTTTGTTGCATACCTAGATAGCCATTCTTATCTTCTCATTGATGATCCAAAGAAAATTGCAATAAGGTACATATCCACCTGGTTTGCTTTTGATGTCTGCTCAACAGCACCACTCGAGTCCATCAGCCTCCTCTTCACTAACCATAGCAGTGAGCTTGGCTTCAAAGTTCTTAACATGTTTCGATTATGGCGTCTGAGACGCGTCAGTTCTCTATTTGCAAGACTTGAAAAGGACATTCGCTTCAATTATTTCTGGATTAGGTGCACGAAGCTCATTGCTGTAAGCCACAAAAACCCCTTAAGTTTGCTTTCTTCCGTTAAAATTTCACACAAGGTAACCTTGTTTGCAGTGCACTGTGCGGGATGCTTTAACTATCTAATTGCAGATAGGTACCCTGATGCCAAAAGAACCTGGATTGGTGCAATGTACCCAAATTTTAAAAAAGAAAGTCTTTGGGACAGATATGTCACTGCAATATACTGGTCCATTGTCACGCTTACTACCACTGGCTATGGGGATTTACATGCTGAGAACACGAGAGAGATGCTGTTTGACATCTCTTACATGCTGTTCAACTTGGGTCTAACATCATATATCATTGGAAACATGACTAACCTTGTAGTGCACTGGACCAGCCGCACCAGAAATTTTAGGGATACAGTCAAAGCAGCTTCTGAATTTGCTTCAAGAAATCATTTGCCCCACCGCATACAAGATCAAATGTTGGCACACATATGTTTGAGGTACAAAACAGAAGGACTGAAGCAGCAAGAAACATTAAATGATCTGCCAAAGGCNATTCGTTCAAGCATTGCGCACCATCTCTTTTTCCCTGTCGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCCATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCTGAGTACTTCCCACCCAAGGAAGATGTGATACTGCAAAATGAGTCTCCTACAGACCTTTACATGCTGGTTTCAGGGGCAGCGGAACTCATTCGCTACATTGATGGGCATGATCAAGTTCTTGGGAAGGCAATTGCAGTAGATGCATTTGGAGAGATTGGAGTTTTATATGGTATACCACAGCCTTTCACAGTTCGGACCACAGAACTTTCTCAGATTTTAAGGCTCAACAGAACATCTTTAATGAATGTTCTACAAGCAAATCCAAGAGATGCACAAATTATAATGGATAACCTTTTAATGAGATTAAAGGGGCANGAAGGATTCGACTTTGAATATCCACGTACAGATCCTGAATCGGTTCTACATGAACTGCTTCATGGAGGTAACACGATAAGAAGCTCTTCTCGTGAGAGTACAAATAATCTACATGGGCATTCGTTCATGCATAATGGAGAACACATAAATAACAGAGACTCACAGAACAGTTTGCAGACGGTGACTAATGATGCTCATTTAGTCACTGAACATAGCATGATCCCTGAGGATGGCAAAAGAGATCTTCATGCTGATGCACGCAAAGGGAATCTAGACATTGTTGAGATTCTGCTTGAAAGAGATGCAAAAGCAAAGAACACTAATGCCTTAGGGTGGACACAAAAAGCTCTAGTACAACAGCTTAAAAACAAGANCATTTCTGACCAAATAATGAGTTGTGAAAACGACAAGAAATCAGATGAATGTAGAATAGAGATTGTGGAGCCAGAAATCCTTAACCTTGGCAGGAACGGCTCAACCAGAAACAGTAGACATATCAACTTCCCATTAGAGAAAGTATACACAGACTCCAATTCAAGAAATTCTAATTGTCCAAGTGATAAAGAAACGGCAAGGTTCATGAAGAAGAGAGTAACAATCCATTTGCTTGACGGATGCAGAAGTAGTTCACGTGGACAGCATGGAAAGTTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCAGCTTCAACCCTACAAAAGTAATTAATAAAGAGAATGCAGAGATAGATGACATTGATGTCATTCGAGATGGCGATCATCTCTTTCTTCTTTGCAGCGATAGTGAAAATTTGAGTTCATGATGTTACCAATGTAGATATGACAGTAGATAGTACCCTNAGGAATATAATGGCAATGGTATAATCAAATATTAAAAATGCCAAGCATCCAGCAAGATATTGGAAAATCATACAATACAATTACAAAAGCTGCTCTTCGTTTATGATTGCTGAAACAAAATTTTACAGTCTCATTAAGACAGGGCTGGTTAAAAATCCAACAGAATAAGTCATGTGACCAAGTGACAGTCTCTGAAACGTGTTTGCTGATGTATCGCATGTTTCAAACAGTATTTGACAGTTTTTAATTTCCCTGAGAACCCAGCTAATTAATTCCTTTACAACCAGAAGTGCTCTTGCTCAGAGTAAGAGATACCAGAGTAACTTCAAAGAAGCATCTCACATTGTGCCGACACAGTCTGGAGTTCTAAAAACCGTCTATCGAATGCATTTGATGAATAAATCTCATTTCTTCAAATTGATTGGTATAGGATGTGCTTCTGTGTTAAAAACAAATTTATCCAATGGAATAATGGAGCTGTCCCCAAAAAGCAAGTATAAATACTTCAGTGTTTCTCCGAGAAAGAAAGTCTCCATTTTNTCTCTTTTAGGAGGAGGAACACTAGTTACATCGTCCAGAGAAGAATATCCNCCAGTATCAACCTTTGTATACTTTTCAAAAGCTTCAAAGATTTGCCAACCCCATTCACGATATCTGTAAGACAATATATATATATGTGATTATTTCAGGGGGAAAAACAGGAAAAGAAAAATTAAGCCTATATTTACTGTTTCTTGTGTATGGTCACAAGAAATAAAAATATTAATTAAACCCATACATAAGANGGGAGAAAACATACTGTAGATCTTCTGTAATACGGTACAAGACAAACAATGACTCCACAGTCTCGGGTCTCAAAAGATTATGACGGTCAAGAGGTCTTATTATGATGTCATTAACATATTCTGAGCTCTTATTTCCTCCATCGTGACCTTGTTCAGAAAATTCCTGTGTATCAAAAGCATACACCAGAGGCTAGATGATATGTCTCCATTCTCACACTATATAAATGCAGTTAAAAAAAATACCTCCCATATACAGCATCAAAAAAATACTTTCCATGAGCAACATCATAGAGCAGAGGACATAAAGTAGATAGTGAGATTCGTTGCTGCTTTTGCATGTGATCTTTTATCATTTATGAATCCAAAATGCCATAAAAGTCCTACTNACCTCAGTATGAAAGTAAGCAATTTCAGGAGCCAGACCAGTTGAAGTCACTGAGTACATCTCAAAACATGTTTTAGCCAGATCTTCTGCAAGCTTCAAATTTTCTAGGTCTTCAAAGTTAAGCATATTGTTTTCCATTGCCTGTTTCTTTGTAAGGCCTTTAGTGGCACCAAGTGCAAGCGTGCCAGGTAAGAAACACACCTGAATGGGCAGCATAAGTTTACATCAATGTTAGTCGATCAATGTCAACGTTAACAAGGTACCTCATAATTATGATCAAAATGCATAACTGAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00649	48762	54314	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0006813 potassium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005249 voltage-gated potassium channel activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000649s00025282.1	PF00520.26	Ion_trans	93	313	8.40E-17
Glyur000649s00025282.1	PF00027.24	cNMP_binding	415	501	3.60E-11
Glyur000649s00025282.1	PF11834.3	DUF3354	713	783	1.50E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.189
SRR1783600	control	2.294
SRR1783602	moderate drought stress	2.637
SRR1811619	moderate drought stress	2.448

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.465
DRR006520	Root Summer glycyrrhizin high producing strain	4.596
DRR006521	Root Winter glycyrrhizin high producing strain	5.095
DRR006522	Root Winter glycyrrhizin high producing strain	5.141
DRR006523	Root Summer glycyrrhizin low producing strain	5.046
DRR006524	Root Summer glycyrrhizin low producing strain	4.804
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.263
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.549

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.300
SRR2868004	Drought Stress (root)	8.973
SRR2967015	Control (root)	8.498

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.945
SRR9715740	Leaf	10.806
SRR9715741	Leaf	11.297
SRR9715739	Root	1.187
SRR9715742	Root	3.133
SRR9715743	Root	1.927

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.077
SRR8749028	MeJA induced 9h	4.425
SRR8749029	MeJA induced 9h	5.428
SRR8749030	Uninduced	5.314
SRR8749031	Uninduced	5.844
SRR8749032	Uninduced	4.605

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.664
SRR8400027	Control - Root	6.649