Gene detail

Gene detail information of Glyur000649s00025275

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30040.1	9.00E-118	gibberellin 2-oxidase
NR	XP_003593922.1	0	Gibberellin 2-oxidase [Medicago truncatula]
COG	YP_003951023.1	2.00E-31	2OG-Fe(II) oxygenase [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q9XG83\|G2OX_PHACN	0	Gibberellin 2-beta-dioxygenase
trEMBL	tr\|G7IPV5\|G7IPV5_MEDTR	0	Plant gibberellin 2-oxidase {ECO:0000313\|EMBL:AES64173.1}

Sequence

Transcript Sequence

>Glyur000649s00025275.1
ATGGTTGTTCTGTCTCAGCCTGCAGCATTAAACCAGTTTTATGTGGTGAAGGCATGCAAGCCTTCCACAACGTTGTTCACGGGAATTCCAGTGGTTGACCTCTCAGACCCAGAAGCGAAAACGCTCATAGTGAAGGCCTGCAAGGAGTTTGGCTTCTTCAAGGTGGTGAACCATGGTGTGCCATTGGAACTCATGTCCAATCTTGAAAACGAAGCACTCAGGTTCTTCAGAAAATCTCAGTCAGAGAAAGACAGAGCAGGTCCCCCTGACCCTTTTGGCTATGGAAGCAAGAGGATTGGGTCAAACGGTGATGTGGGTTGGGTTGAATACATCCTCCTCAACACCAACCCTGACGTCATCTCCCCCAAGTCCCTTTCCATTTTCCGCGAAAACCCACAAAATCTCCGGTGTGCTGTGGAAGAGTATATTCGTGCAATGAAGAGGATGTGTTGTGTGGTGTTGGAATTGATGGCGGAAGGGTTGGGGATTGGGGAGAGGAATGTGTTGAGCAGGTTAGTGAAGGATGAAAGGAGTGATTCATGCTTCAGAGTGAACCACTACCCTGCAGCTTGCCCTGAGGTGCAACAAGCATTGAATGGAAGGAATTTGGTGGGGTTTGGGGAGCACACAGACCCACAGATAATTTCTGTCCTGAGATCCAACAGCACTTCAGGCCTCCAAATATCTCTCCCTGATGGTGCTTGGGTTTCAGTCCCACCTGACCAGACTTCCTTTTTCATCAATGTTGGTGACACTCTCCAGGTATTGACTAATGGGAGGTTTAAAAGTGTAAAGCATAGGGTTTTGGCTGACACAACAAAGTCAAGGTTGTCAATGATATACTTTGGAGGACCACCCTTGAGTGAAAAGATAGCGCCTTTACCTTCACTCTTGTTAAAAAAGGAGGAGAGTTTGTACAGTGAGTTCACATGGTGTGAGTACAAGAAAGCTATGTACAATTCAAGGCTGGCCGATTATAGGCTTGGCCCTTTGAGAAATCTGCTACCAAATGAGGCGAAGAGCGTGTCAAAATTCTACTGCATTTTGGCACATGCTATTGGCTATGGAGTAACACAAGTGTTCAGTATTGGGGTTCAAACAAAACAAAGACTTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00649	564	3081	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04125	E1.14.11.13	EC:1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000649s00025275.1	PF14226.1	DIOX_N	29	118	6.70E-18
Glyur000649s00025275.1	PF03171.15	2OG-FeII_Oxy	179	283	8.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.219
SRR1783600	control	0.208
SRR1783602	moderate drought stress	0.254
SRR1811619	moderate drought stress	0.201

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.235
DRR006520	Root Summer glycyrrhizin high producing strain	0.144
DRR006521	Root Winter glycyrrhizin high producing strain	0.572
DRR006522	Root Winter glycyrrhizin high producing strain	0.340
DRR006523	Root Summer glycyrrhizin low producing strain	0.274
DRR006524	Root Summer glycyrrhizin low producing strain	0.522
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.519
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.050

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.337
SRR2868004	Drought Stress (root)	0.732
SRR2967015	Control (root)	0.894

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.606
SRR9715740	Leaf	1.011
SRR9715741	Leaf	6.460
SRR9715739	Root	0.000
SRR9715742	Root	7.858
SRR9715743	Root	4.732

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.710
SRR8749028	MeJA induced 9h	13.756
SRR8749029	MeJA induced 9h	5.195
SRR8749030	Uninduced	117.390
SRR8749031	Uninduced	20.356
SRR8749032	Uninduced	36.554

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.577
SRR8400027	Control - Root	1.303