Gene detail

Gene detail information of Glyur000648s00033132

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62180.1	8.00E-38	carboxyesterase 20
NR	XP_007152365.1	4.28E-85	hypothetical protein PHAVU_004G123900g [Phaseolus vulgaris]
COG	YP_007321456.1	4.00E-15	alpha/beta hydrolase domain-containing protein [Fibrella aestuarina BUZ 2]
Swissprot	tr\|Q9LVB8\|CXE20_ARATH	7.00E-51	Probable carboxylesterase 120
trEMBL	tr\|V7C2K1\|V7C2K1_PHAVU	2.00E-85	Uncharacterized protein {ECO:0000313\|EMBL:ESW24359.1}

Sequence

Transcript Sequence

>Glyur000648s00033132.1
ATGCCCCTTTTTTCTTTATCGAACTCCAAATGCTTCTACAGAACCACCTCAATTACATTTGCATTCTCCTTAAGTTATTTCCTCCTAATGTTAAACTCAACCACACAGCTCCAAACCCAATCTCCAAATCCATGCAANGATCCGTACAAGGTGCTAAATCTCATCCTCAACCCAGATGGAACAGTCACGCGCCCAAACCCAACACCAGTGAGCCCACCCGCACCNGATCCCACCCTCCCCAACCTCGTACTCTCCAAGGATATCCCCATCAACCAATCAAAAGGCACNTGGGCGAGGATCTACCTACCCCGCGAAGCACTGGATCATGGCCCCAGTAATAAGCTCCCNCTGGTGGTTTTCTTCCATGGTGGCGGGTTCATCTTTCTTAGCGCAGCCTCCACCATGTTTCANGAGTTCTGTTTCAACATGGCAAACGACGTCGCTGCGGTCGTTGTGTCCATAGAGTACCGCCTCGCACCGGAACATAGGCTCCCTGCTGCGTACGAAGATGCAGTGGAGGCGCTACACTGGATCAAAACCAACAAAGAAGATGATTGGCTCACAAAACATGTCGATTACTCCAAGGACGGGTCTCAAAGATTCTCCTCTCAATAGAAAATTTGAAGAGTATGAATAAAAATACTAAATAAGCAATTGCTACTACAACTATAAAAAACTCCAGCACCAACCTCAACATCTGACAAACTAGAATCTAGAAGAATTAATCAGAACATTAGTAAAGCAAAATGGAAATTGGAGTAAACCCAGCCAATGCAAAACACTAAAAACTAGAAAACAGTAATTTGCAGTGGGGTGAAGAATTGGGGAAATTGAAGTGGGGAAATGGGGGAATCNCCGTCCAACGAACAACCCACGCGAAGAAGAAGCAGAAGAAGACGCCAAACAGTTTCTTCCATAGTTTCTTTGGAGCTTCTTGTTGGAATCCATGGTGGCTCATCCNTGTTGCTTCGTTCATTCGTCTTCCTTTCAAAGCTGCTTCTGTTGGACAACCAGATCTAAGGGTAGCANCCACCACCACCTCCATGGAACCATACATGTTNGAGCAGCACTACATCGACGCCGCCAACACCTCCGACCCCTTCCAACTCCTCCACCAGCCCTGGCGCAACCCTCTCGAACGCCCCTCCTCTGGCTCGCCGACCTCCACCCCTCCCTCTTTACCGACCCCGCTCCTTCCTCCACCGACACGACAACGACGACGAAGAAGACAGAGGGATCCCATGAAAAAACCCCTCTATGGAAGGAGCGTAGATCTCCGGCATATGTCTTGGTTGTGGAAGGTGCGCATGGACAAGCTATTGGACATGGCGGAAGGGGAAAATGTCTCGGATGTGGTTTTCCAGTACCTCTAATGGCGGAATCGGAGCACCTCTCATGAGGAGTTGGTGGTGAAACATGAGAGTGATCTTGGTAGTGGGAGAGATGGCGCTGCTGATGTGGTGGTTGACTAGCCACGTAAGATTACATGTGTCATTAGTAGATAACGTGGCATAATTGACTTTGAACTTCCATCTGCCATGTCACATTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00648	79472	82024	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000648s00033132.1	PF07859.8	Abhydrolase_3	118	193	2.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.472
SRR1783600	control	1.574
SRR1783602	moderate drought stress	2.201
SRR1811619	moderate drought stress	2.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.480
DRR006520	Root Summer glycyrrhizin high producing strain	18.246
DRR006521	Root Winter glycyrrhizin high producing strain	10.871
DRR006522	Root Winter glycyrrhizin high producing strain	9.890
DRR006523	Root Summer glycyrrhizin low producing strain	1.565
DRR006524	Root Summer glycyrrhizin low producing strain	1.516
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.244
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.351

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.341
SRR2868004	Drought Stress (root)	4.091
SRR2967015	Control (root)	3.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.685
SRR9715740	Leaf	3.177
SRR9715741	Leaf	2.176
SRR9715739	Root	2.170
SRR9715742	Root	1.965
SRR9715743	Root	1.368

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.737
SRR8749028	MeJA induced 9h	1.825
SRR8749029	MeJA induced 9h	2.155
SRR8749030	Uninduced	0.875
SRR8749031	Uninduced	0.791
SRR8749032	Uninduced	0.768

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.234
SRR8400027	Control - Root	1.946