Gene detail information of Glyur000648s00033130 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62180.1 | 2.00E-89 | carboxyesterase 20 |
| NR | KEH26552.1 | 5.89E-158 | gibberellin receptor GID1, putative [Medicago truncatula] |
| COG | YP_706618.1 | 2.00E-14 | esterase [Rhodococcus jostii RHA1] |
| Swissprot | tr|Q0ZPV7|CXE1_ACTER | 8.00E-116 | Carboxylesterase 1 |
| trEMBL | tr|A0A072UA80|A0A072UA80_MEDTR | 2.00E-158 | Gibberellin receptor GID1, putative {ECO:0000313|EMBL:KEH26552.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00648 | 67093 | 71666 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000648s00033130.1 | PF07859.8 | Abhydrolase_3 | 92 | 314 | 2.60E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.097 |
| SRR1783600 | control | 5.004 |
| SRR1783602 | moderate drought stress | 2.603 |
| SRR1811619 | moderate drought stress | 2.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.009 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.102 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.462 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.687 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.859 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.914 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.910 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 63.567 |
| SRR2868004 | Drought Stress (root) | 74.193 |
| SRR2967015 | Control (root) | 48.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.827 |
| SRR9715740 | Leaf | 2.141 |
| SRR9715741 | Leaf | 2.387 |
| SRR9715739 | Root | 5.979 |
| SRR9715742 | Root | 4.425 |
| SRR9715743 | Root | 4.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.609 |
| SRR8749028 | MeJA induced 9h | 3.811 |
| SRR8749029 | MeJA induced 9h | 3.876 |
| SRR8749030 | Uninduced | 0.739 |
| SRR8749031 | Uninduced | 0.915 |
| SRR8749032 | Uninduced | 0.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.924 |
| SRR8400027 | Control - Root | 7.565 |