Gene detail information of Glyur000648s00033129 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62180.1 | 2.00E-89 | carboxyesterase 20 |
| NR | XP_008234322.1 | 0 | PREDICTED: uncharacterized protein LOC103333282 [Prunus mume] |
| COG | YP_706618.1 | 2.00E-15 | esterase [Rhodococcus jostii RHA1] |
| Swissprot | tr|Q0ZPV7|CXE1_ACTER | 2.00E-115 | Carboxylesterase 1 |
| trEMBL | tr|A0A061G0D6|A0A061G0D6_THECC | 0 | Carboxyesterase 20, putative {ECO:0000313|EMBL:EOY23026.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00648 | 57517 | 67061 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000648s00033129.1 | PF07859.8 | Abhydrolase_3 | 83 | 304 | 3.30E-45 |
| Glyur000648s00033129.1 | PF07859.8 | Abhydrolase_3 | 422 | 577 | 8.90E-30 |
| Glyur000648s00033129.2 | PF07859.8 | Abhydrolase_3 | 97 | 310 | 4.10E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.108 |
| SRR1783600 | control | 5.087 |
| SRR1783602 | moderate drought stress | 3.629 |
| SRR1811619 | moderate drought stress | 3.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.527 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.260 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.267 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.540 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.357 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.373 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.221 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.377 |
| SRR2868004 | Drought Stress (root) | 24.819 |
| SRR2967015 | Control (root) | 19.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.182 |
| SRR9715740 | Leaf | 10.023 |
| SRR9715741 | Leaf | 8.374 |
| SRR9715739 | Root | 7.204 |
| SRR9715742 | Root | 3.793 |
| SRR9715743 | Root | 4.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.939 |
| SRR8749028 | MeJA induced 9h | 31.850 |
| SRR8749029 | MeJA induced 9h | 26.373 |
| SRR8749030 | Uninduced | 24.834 |
| SRR8749031 | Uninduced | 21.472 |
| SRR8749032 | Uninduced | 24.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.263 |
| SRR8400027 | Control - Root | 5.676 |