Gene detail

Gene detail information of Glyur000648s00033126.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25420.1	1.00E-150	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_006586607.1	0	PREDICTED: gibberellin 20-oxidase 1 isoform X1 [Glycine max]
COG	YP_005012048.1	1.00E-32	2OG-Fe(II) oxygenase [Niastella koreensis GR20-10]
Swissprot	tr\|Q39110\|GAOX1_ARATH	0	Gibberellin 20 oxidase 1
trEMBL	tr\|I1L3G4\|I1L3G4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G27490.1}

Sequence

Transcript Sequence

>Glyur000648s00033126.1
TGGCTTTTCTTTCATCCTCTCTCTTTCTGTTTTTCTCTCTATAGCTACCCATTAATTTAATTAATATTATTGTTATTTTTATTTTTATTACTATTATAAACTAGTTTTGCATTGTTAATGCAATGGCAATAGAGTGCATAACAAGCACACAATCCATGCCTCAACCACCAAAGCACCACCACCACNAAGAAGAAGAAGATGAGTCACCATTGGTTTTTGATGCTTCCTTTTTGAGGCACCAACTAAACCTCCCAAAACAGTTCATTTGGCCAGATGATGAGAAGCCATGCATGAATGTGCCTGAGCTTGTTGTCCCACTCATTGACTTGGGAGGGTTCCTCTCTGGTGACCCAGTTGCCACAATGGAAGCTTCTAGACTCATTGGTGAGGCATGCCAAAAGCATGGATTTTTCCTTGTTGTGAACCATGGGATTGATGCCAGGCTAATAGGGGATGCCCATAGCTACATGGATGGTTTCTTTGAGACTCCCCTGTCTCAGAAACAGAGGGCTCAGAGGAAAACAGGGGAACACTGTGGCTATGCTAGTAGCTTCAGTGGAAGATTCTCCTCCAAACTTCCATGGAAAGAGACACTTTCCTTTCAGTTTTCAGCTGAGGAAAACTCACCCCCTATTGTCAAAGACTACTTGTGCAACACATTGGGGAAGGAGTTTGAGCAATTTGGGGAGGTTTACCAGGAGTACTGTGAAGCCATGAGCACACTTTCTTTGGGGATAATGGAGCTTCTGGGAATGAGCCTTGGAGTGGGAAAATCCTGTTTNAGAGAGTTCTTTGAAGAGAACAACTCAATAATGAGGCTCAATTACTACCCTCCTTGTCAAAAACCTGACCTCACTTTGGGCACTGGACCTCATTGTGACCCAACATCTCTAACCATTCTTCACCAAGACCAAGTGGGTGGCCTCCAAGTTTTTGTTGACAATGAGTGGCATTCAATCAGTCCCAATTTCAATGCCTTTGTTGTCAACATAGGTGACACCTTCATGGCTCTTTCAAATGGGAGATACAAGAGTTGCTTGCACAGGGCAGTGGTGAACAGCAACACAACAAGAAAGTCTCTTGCTTTCTTCTTGTGTCCAATGGGTGATAAGGTGGTTAGTCCACCAAGTGAATTGGTGGATAATTTCACACCAAGGGTGTACCCAGATTTTACATGGCCTATGCTGCTTGAGTTTACTCAGAAACACTACAGAGCTGACATGAAAACACTTGAGGCATTCNCCAAATGGCTTCTTCAACAGAAAAGGGGCTGAAAATTGTGAAATTTTCAAGCACACGAATGAATGGCATGTTATTATTAGGCCCTTTGAGAACCCNATATAAGAAAAAAGTGACAAATCAGGTTGAAGTGGGAGTGTAATTGATGGTGGTAAAAGGGTAGTGAAGGAAGTGAGAGTTAAAAAAGGTGAAAGAATTGAAGAATCATAGTTTCTTCATCTATTGTTGAGTGTGGAACACTAGTGATGAGTAATGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00648	46296	48244	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05282	E1.14.11.12	EC:1.14.11.12	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000648s00033126.1	PF14226.1	DIOX_N	64	173	2.80E-26
Glyur000648s00033126.1	PF03171.15	2OG-FeII_Oxy	229	326	1.50E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.223
SRR1783600	control	3.206
SRR1783602	moderate drought stress	2.923
SRR1811619	moderate drought stress	2.913

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.358
DRR006520	Root Summer glycyrrhizin high producing strain	2.467
DRR006521	Root Winter glycyrrhizin high producing strain	2.534
DRR006522	Root Winter glycyrrhizin high producing strain	2.328
DRR006523	Root Summer glycyrrhizin low producing strain	6.808
DRR006524	Root Summer glycyrrhizin low producing strain	6.981
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.359
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.395

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.331
SRR2868004	Drought Stress (root)	0.767
SRR2967015	Control (root)	2.169

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.594
SRR9715740	Leaf	10.604
SRR9715741	Leaf	8.309
SRR9715739	Root	1.193
SRR9715742	Root	7.393
SRR9715743	Root	6.394

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.137
SRR8749028	MeJA induced 9h	3.984
SRR8749029	MeJA induced 9h	6.062
SRR8749030	Uninduced	4.402
SRR8749031	Uninduced	2.504
SRR8749032	Uninduced	5.701

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.317
SRR8400027	Control - Root	13.853