Gene detail information of Glyur000647s00023068.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30520.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_004500391.1 | 0 | PREDICTED: root phototropism protein 2-like [Cicer arietinum] |
| Swissprot | tr|Q682S0|RPT2_ARATH | 0 | Root phototropism protein 2 |
| trEMBL | tr|I1MZN6|I1MZN6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G05720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00647 | 111121 | 113380 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000647s00023068.1 | PF00651.26 | BTB | 62 | 159 | 8.20E-08 |
| Glyur000647s00023068.1 | PF03000.9 | NPH3 | 222 | 476 | 8.00E-79 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.044 |
| SRR1783600 | control | 1.142 |
| SRR1783602 | moderate drought stress | 1.550 |
| SRR1811619 | moderate drought stress | 1.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.176 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.234 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.116 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.113 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.480 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.528 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.789 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.050 |
| SRR2868004 | Drought Stress (root) | 22.625 |
| SRR2967015 | Control (root) | 24.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 121.969 |
| SRR9715740 | Leaf | 111.974 |
| SRR9715741 | Leaf | 98.434 |
| SRR9715739 | Root | 1.745 |
| SRR9715742 | Root | 0.575 |
| SRR9715743 | Root | 0.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.553 |
| SRR8749028 | MeJA induced 9h | 7.666 |
| SRR8749029 | MeJA induced 9h | 4.619 |
| SRR8749030 | Uninduced | 3.200 |
| SRR8749031 | Uninduced | 1.032 |
| SRR8749032 | Uninduced | 4.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.300 |
| SRR8400027 | Control - Root | 5.139 |