Gene detail

Gene detail information of Glyur000647s00023066

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58300.2	0	Leucine-rich repeat protein kinase family protein
NR	XP_006591269.1	0	PREDICTED: probable inactive receptor kinase At5g58300-like isoform X3 [Glycine max]
COG	YP_004775215.1	2.00E-20	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	0	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|I1LLZ1\|I1LLZ1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G31440.1}

Sequence

Transcript Sequence

>Glyur000647s00023066.1
CTGTCCTCTGACTTCTCTCACTTCTCATGACACTCACATCCAATAAAAGTCTCACTCTCAACCTTTCAGTTACAAACATAAACAATTAATAAACAAATAAATAAATAAGGAAGAAATCTCAAACCTTTTTCTCTGTCTCTGAGAGTCAGGGGTAGGTCAAGAAAGAGAAGGAGGTTGAATTGAGTTCTTGTAGCAGCTTCTGCTATTATTCTCTTTTGCTTAAACTGCTCCTCAGTTTGAGGCAAATTCCCTGGCTTTATGGGCTGCTACTAATGCCATGCTTCTTCCCAGTGAAACCCAGTTGCAGATGATCATGAATGCTCTAAANCAATTACATGCATGAGAATACTCTAAAGCAGAAGCAAGCACCCCCACCAACTTCCATTTTCTNCTTCAGCAAATGCTACTTGACCTTGTGTTTCAGCTCTGAATTTTGATGCTAACACCTGCTTCTGAGCTCTCCCATGCTTCCTTTCAGGAAAATATGAAGGCCAGCAAAGTTCACCCTGAATTTAATTGTCCATGTCCTGTTCCTTACAGAAAACTACTCTCTGTGATGTTCAATTCTACTTCAGTGGCTTCTTTCCTTTTTGTCTTGGTTATTCTCTTCCCTCTGGCTATTGCTGACCTTAGTTCAGATAAGCAAGCCCTTCTTGATTTTGCTAATGCTGTGCCCCACCGTCGGAACCTGATGTGGTATCCATCCACCTCAATCTGTACATCTTGGGTTGGCATCACTTGCAATGAAAATGGAACTCGTGTTGTTAATGTCCGGCTCCCTGGAGTTGGACTAGTGGGCACCATCCCATCTAATACACTTGGCAAGCTTGATGCTGTGAAAATTATTAGCCTTCGCTCCAACCTACTCATCGGAAATCTGCCTGCTGACGTTGCTTCTCTTCCTTCACTTCAGTATCTCTACCTCCAGCATAATAACCTTTCTGGTGATATACCTACCTCATTGTCACCCCAGCTAATTGTACTTGATTTGTCATATAATTCCTTCACTGGTAGGATTCCGAAGACATTGCAAAATTTGACNGAATTAAGTAGTTTGAGTCTCCAGAACAACTCCCTATCTGGACAGATACCTAATCTCAATGTTACTAACCTCAGATCTTTGAATTTAAGCTACAACAACTTGAATGGATCTATCCCTGCAGCTCTTCATATTTATCCTAATTCCTCCTTTGAAGGAAACTCTCTTTTNTGTGGACCACCTCTAAAGCCTTGCTCTGCGATTCCCCCTACACCTCCTCCTGCCTTGACTCCTGCTCCATCATCAGCTCCTGGAAGACAAAACTCCAAAAATAAACTGAGTAAGGTAGCTATCATTGCCATTGCGGTTGGTGGAGCTGTGCTGCTATTTTTTGTAGTTCTTGTTATTGTTCTTTGCTGTTTAAAGAAGGAAGATGACAGAGACTCCAATGTAATTAAAGGGAAGGGTCCTAGCGGTGGTGGCCGGGGTGAGAAGCCAAAAGAAGAGTTTGGAAGTGGAGTGCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTNGAGGGCAGTTCTTATAATTTTGATCTTGAAGACTTGCTGAGAGCTTCAGCTGAAGTTCTAGGAAAAGGTAGCTATGGTACTTCATATAAGGCTATATTGGAGGAGTCAATGACAGTTGTGGTGAAAAGGTTGAAAGAAGTCGTGGTAGGCAAGAGGGAGTTTGAACAGCAGATGGAGATCGTGGGAAGGGTTGGACAACACACAAATGTCGTGCCACTCCGTGCTTATTATTATTCAAAAGATGAAAAGCTTTTGGTCTATGACTATGTCCCAGCTGGCAACCTATCCACACTCTTGCATGGCAGTCAGGCAGGTGGAAGGACTCCATTGGATTGGGACTCCCGAGTAAAAATATCCCTTGGAACTGCCAGAGGAATCGCCCACATCCATTCTGTTGGTGGTCCCAAATTCACACATGGAAATATCAAGTCCTCAAATGTCCTCCTCAACCAAGATAACGATGGCTGCATTTCTGATTTTGGCCTGACCCCACTCATGAATGTTCCCGCAACCCCTTCTAGAGCTGCGGGTTATCGCGCTCCTGAAGTGATTGAAGCCCGTAAGCACTCTCATAAATCAGACGTGTACAGCTTCGGTGTCCTCCTTCTGGAGATGCTTACTGGGAAGGCGCCTCTCCAATCTCCGGGGCATGAGGATATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAGGAGTGGACAGCCGAGGTTTTCGATGTGGAGCTAATGAGATACCAAAACATTGAAGAAGAAATGGTGCAGATGTTGCAAATTGCCATGGCCTGTGTAGCAAAGATGCCTGATATGAGACCTAGCATGGATGAAGTGGTGAGAATGATCGAAGAGATCCGGCAATCCGACTCGGAGAACCGACCATCTTCTGAAGAGAATAAATCTAAGGACTCAAATGTTCAAACTCCATAGATTAACTCTGGCTTTTTGCTTAACCAGGAAGCCACACTAAAATGGTACATAAGATTACATGCATGCTTAGTCAAGGTCTCTCAAAACTGNATTCATTTCAAACTTTTTCTGCCCAATTGTTCAATATTTCTCACAGATGGAGTTCCATGAGTTATTTTCTTCTATAGGTAGGTTGCTTTCCTTGAATTCTTAGTGTATTAACATCATGATTCAATTGATGATCTTCATTCTAGTACATTAGGTCCCTTGTGTGCTGTTGGTTATCATGCCATGGCTGGTTAATGGTGATGAAAAATTAGCCTATCTTCAGTCTCTAGTTCCTTTGGTGACATTGTGGGAGTACATTAATAAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00647	92072	96664	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000647s00023066.1	PF08263.7	LRRNT_2	66	103	3.40E-06
Glyur000647s00023066.1	PF00560.28	LRR_1	157	176	0.028
Glyur000647s00023066.1	PF00560.28	LRR_1	179	201	0.053
Glyur000647s00023066.1	PF00560.28	LRR_1	225	242	0.068
Glyur000647s00023066.1	PF00069.20	Pkinase	384	646	8.30E-39
Glyur000647s00023066.2	PF08263.7	LRRNT_2	66	103	3.40E-06
Glyur000647s00023066.2	PF00560.28	LRR_1	157	176	0.028
Glyur000647s00023066.2	PF00560.28	LRR_1	179	201	0.053
Glyur000647s00023066.2	PF00560.28	LRR_1	225	242	0.068
Glyur000647s00023066.2	PF00069.20	Pkinase	384	646	8.30E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.865
SRR1783600	control	5.913
SRR1783602	moderate drought stress	4.823
SRR1811619	moderate drought stress	4.803

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.336
DRR006520	Root Summer glycyrrhizin high producing strain	4.491
DRR006521	Root Winter glycyrrhizin high producing strain	0.637
DRR006522	Root Winter glycyrrhizin high producing strain	0.656
DRR006523	Root Summer glycyrrhizin low producing strain	2.107
DRR006524	Root Summer glycyrrhizin low producing strain	2.079
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.328
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.329

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.252
SRR2868004	Drought Stress (root)	30.382
SRR2967015	Control (root)	30.892

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.269
SRR9715740	Leaf	6.940
SRR9715741	Leaf	7.392
SRR9715739	Root	7.915
SRR9715742	Root	7.381
SRR9715743	Root	7.972

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.777
SRR8749028	MeJA induced 9h	6.019
SRR8749029	MeJA induced 9h	2.081
SRR8749030	Uninduced	1.251
SRR8749031	Uninduced	0.316
SRR8749032	Uninduced	0.557

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.728
SRR8400027	Control - Root	21.193