Gene detail

Gene detail information of Glyur000645s00028171

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G42970.1	Proteasome component (PCI) domain protein
NR	XP_004514521.1	PREDICTED: COP9 signalosome complex subunit 4-like [Cicer arietinum]
Swissprot	tr\|Q8L5U0\|CSN4_ARATH	COP9 signalosome complex subunit 4
trEMBL	tr\|I1L5P9\|I1L5P9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G36550.1}

Sequence

Transcript Sequence

>Glyur000645s00028171.1
AAAATATTTGGGCCGAGGAAGCTCAATGTGCCGAGATTTGAGAGAACTGAGCAAAATACGAAAGGGGAAGAGTGGCGGAGTCGAGAGAGTATAGTGGTGATTCGATTCTATTTTACAACAACGGAGGAGTGAGCAATCACAACCCTCCACCGGCGAGCCCTGTAACTCTCGGCGATAATAGTGATGGAGAGTGCTTTTGCGAGCGCTTCTGCGATTACAGACCAGAGGCAAAAGATAGAGCAGTATAAGCACATCCTTTCTGCTGTCATTTCATCCAATGATATCGTTCAGGCTCGCAGATTCATAGATCACATGTTATCAGATGATGTTCCGTTGGTAGTGTCGCGGCAGCTTCTGCAGACTTTTGCAGAAGAGCTAGGAAGATTGGAGCCTGAGACACAGAAGGAGATTGCACATTACACCCTTGCTCAGATTCAGCCTCGAGTTGTGTCATTCGAAGAGCAGGTTTTAGTTATTAGAGAGAAACTGGCTGAGCTTTATGAATCTGAGGAGCAATGGTCAAAAGCAGCTCAGATGCTCAGTGGTATTGACCTAGATTCAGGAATGAGGGTAATTGATGATACATTCAGATTGTCAAAGTGTGTCCAAATTGCTTGTCTATACCTTGAGGATGACGATGCTGTGAATGCTGAAGCTTTCATTAATAAAGCATCATTCCTGGTTAGCAATAGTCAGCTTGAAGTGCTGAATTTAAAGTACAAGGTTTGCTATGCAAGGATCTTAGATCTGAAAAGGAAGTTCTTGGAAGCAGCCTTACGATATTACGATATATCTCAGATTGAGAAAAGGCAAATAGGAGACGAGGAGATTAATGAGGAAGCACTTGAGCAAGCTTTATCTGCTGCTGTTACATGCACTATATTGGCAGCTGCAGGACCTCAACGTTCCCGTGTTCTTGCCACCTTGTACAAGGATGAACGGTGTTCAAAGTTGAAGATCTATCCTATACTGCAGAAGGTGTACTTGGAAAGAATTCTTCGAAAGCCAGAAATTGAGGCTTTTGCAGAAGAATTGAAACCACATCAGAAAGCTCTTCTTCCAGACAATTTCACTGTGCTGGATCGAGCTATGATTGAGCATAATCTTCTAAGTGCAAGCAAACTTTATACTAATATCAGCTTTGATGAGTTAGGCACGCTGTTGGGAATCCCNCCTCACAAGGCCGAGAAGATAGCATCAAGAATGATTTATGAGGATAGGATGAAGGGATCTATTGATCAGGTTGAAGCTGTCATACATTTTGACGATGACACTGAAGAGTTGCAACGATGGGACCAACAGATTGTGGGCCTATGTCAAGCTCTCAACGATGTTTTGGATAGTATGGCCAAGAAGGGTTTTCCAGTTCCTGTTTGACGTGGATGATCGACAATTTCTTTGTCCATTCATTCTTAGTAAAGCATCTTTTTTTTGTTGATTTTTTTCTGAACTTNACTATACATACAATAACATTAATTCCCTCACATATTAGATTCCAGATTCAGTTCATCCAAGGGCTCATTTGNTTACTGCTTCTGCTTAATGAATTTCTGAAGCTCATCTCGGTTGTGCTCGACACAACTCCATTCTGTTTTGCCGATGTAGTGATGTACAAATGAGTGTCTAAGAAATATAAAGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00645	98168	104062	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000645s00028171.1	PF01399.22	PCI	268	361	5.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.632
SRR1783600	control	12.205
SRR1783602	moderate drought stress	10.810
SRR1811619	moderate drought stress	10.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.029
DRR006520	Root Summer glycyrrhizin high producing strain	15.625
DRR006521	Root Winter glycyrrhizin high producing strain	22.785
DRR006522	Root Winter glycyrrhizin high producing strain	22.418
DRR006523	Root Summer glycyrrhizin low producing strain	24.012
DRR006524	Root Summer glycyrrhizin low producing strain	24.481
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.092
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.602

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.449
SRR2868004	Drought Stress (root)	26.191
SRR2967015	Control (root)	24.290

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.791
SRR9715740	Leaf	20.797
SRR9715741	Leaf	22.173
SRR9715739	Root	4.473
SRR9715742	Root	10.230
SRR9715743	Root	10.029

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.203
SRR8749028	MeJA induced 9h	32.705
SRR8749029	MeJA induced 9h	50.218
SRR8749030	Uninduced	31.344
SRR8749031	Uninduced	19.749
SRR8749032	Uninduced	20.444

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.546
SRR8400027	Control - Root	31.724