Gene detail

Gene detail information of Glyur000645s00028168.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51460.2	1.00E-133	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_003541164.1	0	PREDICTED: trehalose-phosphate phosphatase A-like isoform X1 [Glycine max]
COG	YP_003269585.1	2.00E-52	trehalose-phosphatase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|O64896\|TPPA_ARATH	5.00E-164	Trehalose-phosphate phosphatase A
trEMBL	tr\|I1LNS7\|I1LNS7_SOYBN	0	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}

Sequence

Transcript Sequence

>Glyur000645s00028168.1
ATGGACTTGAAGTCGAATAATACTCCTGTTCTCACTGATACTGCACCCATGACAAAGTCAAGTCTGCATATGCATTCCAGTTTGTTGCCTTATTCCCATGCAGGGGCAACCTTTCCACATGGTATGTTATTGAATATCCCAAGGAAGAAGACAGGAATCCTCGAAGATGTTCGTTGTAGTNGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCCAAGTATATAACAAAGGATGTTAATCATGGGTTTGCATCATCTGAATCTGATGCAGCTAGTTCTTATTTTACCTGGCTGCTAAAATATCCATCAGCACTTGCATCTTTTGATCAAATCACGAACTACGCAAAGGGCAAAAGAATTGCATTGTTTCTGGATTATGATGGAACTCTTTCACCGATTGTGGANAATCCTGACTTTGCCTTCATGTCGGACAATATGCGTGCNGCTGTTAAAAAGGTGGCAGAGTATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTGCACGAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTCAGACAATCTGTATCTGATAACCATCCNAATTGCATCATTAGGTCTACAGACAAGCAGGGCAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTAATGAGGTGTTGAAGTCTCTCATTGAGTGTACAAAAGACATCAAAGGAGCAAAAGTTGAGGACAATAAATTTTGTGTATCTGTACATTACCGCAATGTAGATGAGAAGATTTGGGATTTGGTGGGGCAACGTGTTAATGATGTTCTGAAGGGCTATCCGCNTTTGCGATTAACTCACGGTCGTTTTAGAGGACTTAACAATTGTGACGATGTGCTTCCTATATATATTGGCGATGATCGGACGGATGAAGATGCATTCAAGGTATTGAGAGAGGGAAATAAAGGTTATGGGATTTTAGTGTCTTCAGCTCCAAAGGAAAGCAATGCAATTTACTCTCTTCGTGACCCGTCGGAGGTCATGGAATTTCTCAAGTCGCTTGTGTTATGGAAGTCAAGCTCCATAAAAAGCCTTATATAGTGAGTGTATAGAGGAGGAGAATATACTCTGCTATACTATAGTAGTACCATATATATAATAAAAAAAAAACCAGCTTTTTTGGATTTCGNTTTTCTAGGAAACATTCCAAGAGGTTTCTTGGAGCAGATATGCGCACAGAAGACCTCTCTTAATGGTAGCAACAGCNTTGTAGCTACCTTGTTTTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00645	63911	66635	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01087	otsB	EC:3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005992 trehalose biosynthetic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000645s00028168.1	PF02358.11	Trehalose_PPase	124	291	5.60E-41
Glyur000645s00028168.1	PF02358.11	Trehalose_PPase	294	347	6.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.057
SRR1783600	control	0.057
SRR1783602	moderate drought stress	0.450
SRR1811619	moderate drought stress	0.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.054
DRR006523	Root Summer glycyrrhizin low producing strain	0.053
DRR006524	Root Summer glycyrrhizin low producing strain	0.085
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.769
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.187

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.149
SRR2868004	Drought Stress (root)	23.682
SRR2967015	Control (root)	5.900

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.181
SRR9715740	Leaf	20.758
SRR9715741	Leaf	18.403
SRR9715739	Root	0.060
SRR9715742	Root	0.110
SRR9715743	Root	0.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.989
SRR8749028	MeJA induced 9h	94.694
SRR8749029	MeJA induced 9h	110.026
SRR8749030	Uninduced	69.211
SRR8749031	Uninduced	129.975
SRR8749032	Uninduced	78.676

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.696
SRR8400027	Control - Root	3.254