Gene detail information of Glyur000644s00020356 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42905.1 | 9.00E-09 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | AFK41923.1 | 1.27E-49 | unknown [Lotus japonicus] |
| Swissprot | tr|P0C2F6|RNHX1_ARATH | 1.00E-14 | Putative ribonuclease H protein At1g65750 |
| trEMBL | tr|I3SNT1|I3SNT1_LOTJA | 5.00E-50 | Uncharacterized protein {ECO:0000313|EMBL:AFK41923.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00644 | 117870 | 118613 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000644s00020356.1 | PF13456.1 | RVT_3 | 134 | 215 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 131.532 |
| SRR1783600 | control | 132.027 |
| SRR1783602 | moderate drought stress | 131.158 |
| SRR1811619 | moderate drought stress | 130.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 190.853 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 188.930 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.027 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.764 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 126.876 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 127.972 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.739 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.862 |
| SRR2868004 | Drought Stress (root) | 28.632 |
| SRR2967015 | Control (root) | 23.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.768 |
| SRR9715740 | Leaf | 9.154 |
| SRR9715741 | Leaf | 15.380 |
| SRR9715739 | Root | 319.103 |
| SRR9715742 | Root | 133.003 |
| SRR9715743 | Root | 183.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.386 |
| SRR8749028 | MeJA induced 9h | 2.651 |
| SRR8749029 | MeJA induced 9h | 3.205 |
| SRR8749030 | Uninduced | 0.171 |
| SRR8749031 | Uninduced | 0.243 |
| SRR8749032 | Uninduced | 0.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 78.515 |
| SRR8400027 | Control - Root | 93.565 |