Gene detail

Gene detail information of Glyur000644s00020354

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34300.1	0	lectin protein kinase family protein
NR	XP_006606200.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300-like [Glycine max]
COG	YP_001958461.1	1.00E-24	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9XID3\|Y1343_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 (Precursor)
trEMBL	tr\|K7N421\|K7N421_SOYBN	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000644s00020354.1
ATGAAGATGATGTCTCAAACACAAGAACATCCTCTGCTATTGTCCTTTTTCGTCTTCTCCGCTGTCATCTTCTCCACCATTGTAGGAGGAACCGCCGCCACCATCTCACCAGGTGCAATCCTCTACGCTTCCAACACAACCCAATCATGGTCATCTCCNAACAACACTTTCTCTCTCCACTTCCTCCCCCTCAACCCCCAAACTTCCCCTCCTTCCTTCACCGCCGCCGTTGTCTACTCCGGCGACTCACCCGTCGTCTGGTCCGCCGGAAACGGCNCCACCGTGGACTCCGGCGGCTCCCTACGGTTCCTCTCCGCCGGAAACCTCCGCCTCGTTAACGGGTCGGGCACCACCGTCTGGGACTCCGGAACTTCCAACATGGGTGTGTCCTCNGCCACGCTTCGTGACAATGGAAACTTGGTTCTCTCCAATGGCACTACCTCTGTTTGGTCGAGCTTTGACAACCCCACTGATACCATTATACCGTCTCAGAACTTCACCGTTGGTATGGTTTTGCGTTCTGGGTCGTACTCATTTTCTGTTCTTAGGTCCGGCAACCTCACCCTCAAATGGAATGATAGTGTTCCTTACTGGGAACAAGGCTTGAACTCTTCCATGAGTGTGGCGAATTTGAGTTCCCCTGTTTTGNGGTTGGAATCCACGGGAATTTTGCAGCTTTTTGATCCCAATTTCACTGCCCCTGTGTTGGTTGCTTACAGCAATGACTATGGTGAAAGGAATGATGATGTGTTGAGGATTTTGAAGCTTGANGGTGATGGGAATTTGAGGATTTATAGCTCCAAAAGAGGTGGTGGGAGTGGGAGTGTGATTGTGAGATGGGTTGCTGTTGAGGATCAATGTGAGGTTTATGGTTACTGTGGAAATTATGGTGTTTGTAGTTATAATAATGGTTCTTCTTCCAACCCCATTTGTGGGTGTCCATCTCAGAATTTTGAGATGGTTGATCCCAATGATGGTAGGAAAGGGTGTAGGAGAAAGGAGAGGCTTGAGGATTGTGTAGGGAAGGTGACCATGTTGCAAGTGGACCATGCTCAATTCTTATCATATCCTCATCAGTTNGTGATCAATCCTGAGATATTTATGATTGGCTTAACAGCTTGCCGTGTGAATTGTCTTTCAGCCGATTCTTGTTTTGCTTCTACTTCCTTGTCAGATGGAAGTGGATTCTGTTACATAAAGACAAGTGATTTCATCAGTGGCTACCACAGTCCTGCTCTACCTAGCACTTTAAACAGCCCAGGATTTGGTGGTTTTGCCGCTCAGTATGCTCTTCTTGAGTATGCTTCTGGTGCACCAATCCATTTCTCTTACAAGGAGCTACAAAGGTCAACAAAGGGGTTCAAGGAGAAACTTGGTGATGGGGGATTTGGTGCTGTCTATAGAGGAATTCTTGCCAACCAAACTGTTATTGCAGTTAAGCAACTTGAGGGCATTGATCAGGGNGAGAAACAGTTCAGGATGGAAGTTTCTACCATAAGTAGTACACATCATNTGAATCTAGTGAGGTTGATTGGCTTTTGCTCTGAAGGGCGTCACAAGCTTTTAGTATATGAGTTCATGAAAAATGGTTCTCTTGACCACTTGCTTTTTGTTAATGAAGCACAATCAGAAGTGTTGAATTGGGGGTACCGGTTCAACATTGCCTTGGGTGCTGCTAGGGGCTTGACTTACCTTCATGAGGAGTGTAGAAACTGCATTGTCCATTGTGATGTGAAACCTGAGAACATTCTCTTAGATGAGAATTACAATGCAAGAGTCTCAGATTTTGGCCTTGCAAGGCTCTTACGTCCAATGGATCAATGGCACCGAAACTTGACAAGTGTGAGAGGCACCAGAGGGTATTTAGCTCCAGAATGGCTTGCAAATCTTCCCATAACTTCAAAATCTGATGTTTACAGTTATGGCATGGTTTTGTTGGAGATAGTGAGTGGNAGAAGGAACTTTGAAGTCTCAGAAGAGACAAGTAGGAAATTTTTTTCCATGTGGGCTTATGAAGAGTTTGAGAAAGGTAACATCATGGGAATAATTGACACAAGACTAGGTAGCCAAGAGATCAAGTTGGAGCAAGTGAAAAGAGTGCTTTTGGCATGTTTTTGGTGCATACAGGAACAACCATCTCACAGGCCAACGATGGGAAAAGTTGTGAAAATGCTAGAAGGTCTGATAGATATTGATAAGCCACCAGCACCAAAACTCATTACGGTAGGATCTTCTGGGGGAATGAAAAACAATGCCACTGCTATNTCCACTGTTGCAACCTCATCAACTCCAACCTCCTCTCCATCTNCATCTTTGTTGCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00644	111405	113887	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000644s00020354.1	PF01453.19	B_lectin	85	168	6.90E-19
Glyur000644s00020354.1	PF00954.15	S_locus_glycop	243	314	2.30E-07
Glyur000644s00020354.1	PF00069.20	Pkinase	455	723	6.00E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.429
SRR1783600	control	1.489
SRR1783602	moderate drought stress	2.187
SRR1811619	moderate drought stress	1.987

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.879
DRR006520	Root Summer glycyrrhizin high producing strain	1.922
DRR006521	Root Winter glycyrrhizin high producing strain	0.559
DRR006522	Root Winter glycyrrhizin high producing strain	0.432
DRR006523	Root Summer glycyrrhizin low producing strain	0.663
DRR006524	Root Summer glycyrrhizin low producing strain	0.646
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.510
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.811

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.790
SRR2868004	Drought Stress (root)	3.096
SRR2967015	Control (root)	1.442

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.368
SRR9715740	Leaf	7.475
SRR9715741	Leaf	9.758
SRR9715739	Root	4.129
SRR9715742	Root	5.107
SRR9715743	Root	3.657

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.871
SRR8400027	Control - Root	2.033