Gene detail

Gene detail information of Glyur000644s00020348

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22540.1	1.00E-40	K-box region and MADS-box transcription factor family protein
NR	ACU24504.1	9.90E-86	unknown [Glycine max]
Swissprot	tr\|Q9FVC1\|SVP_ARATH	2.00E-49	MADS-box protein SVP
trEMBL	tr\|C6TNL2\|C6TNL2_SOYBN	4.00E-86	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G30040.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00644	60860	65856	-

Gene family

Gene family	subfamily
Transcription Factors Family	MIKC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0046983 protein dimerization activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000644s00020348.1	PF00319.13	SRF-TF	9	59	2.20E-23
Glyur000644s00020348.1	PF01486.12	K-box	85	155	5.10E-11
Glyur000644s00020348.2	PF00319.13	SRF-TF	9	59	2.20E-23
Glyur000644s00020348.2	PF01486.12	K-box	85	155	5.10E-11

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.214
SRR1783600	control	0.310
SRR1783602	moderate drought stress	0.163
SRR1811619	moderate drought stress	0.212

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.490
DRR006520	Root Summer glycyrrhizin high producing strain	17.006
DRR006521	Root Winter glycyrrhizin high producing strain	15.933
DRR006522	Root Winter glycyrrhizin high producing strain	15.082
DRR006523	Root Summer glycyrrhizin low producing strain	25.676
DRR006524	Root Summer glycyrrhizin low producing strain	24.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.727
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.356

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.122
SRR2868004	Drought Stress (root)	0.396
SRR2967015	Control (root)	1.246

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.046
SRR9715740	Leaf	25.690
SRR9715741	Leaf	28.568
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.180

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.171
SRR8749028	MeJA induced 9h	0.233
SRR8749029	MeJA induced 9h	0.063
SRR8749030	Uninduced	0.153
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.289

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.363
SRR8400027	Control - Root	0.576