Gene detail information of Glyur000644s00020346 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65420.1 | 4.00E-50 | Protein of unknown function (DUF565) |
| NR | XP_006582849.1 | 9.51E-120 | PREDICTED: uncharacterized protein LOC100499897 isoform X1 [Glycine max] |
| Swissprot | tr|O80813|YC20L_ARATH | 2.00E-69 | Ycf20-like protein |
| trEMBL | tr|I1KL49|I1KL49_SOYBN | 4.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G30060.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00644 | 48941 | 50559 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000644s00020346.1 | PF04483.7 | DUF565 | 146 | 208 | 1.50E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.026 |
| SRR1783600 | control | 3.193 |
| SRR1783602 | moderate drought stress | 2.248 |
| SRR1811619 | moderate drought stress | 2.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.867 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.928 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.851 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.407 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.514 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.555 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.707 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.295 |
| SRR2868004 | Drought Stress (root) | 17.827 |
| SRR2967015 | Control (root) | 15.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.083 |
| SRR9715740 | Leaf | 13.164 |
| SRR9715741 | Leaf | 9.822 |
| SRR9715739 | Root | 7.859 |
| SRR9715742 | Root | 6.141 |
| SRR9715743 | Root | 6.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.181 |
| SRR8749028 | MeJA induced 9h | 9.212 |
| SRR8749029 | MeJA induced 9h | 12.697 |
| SRR8749030 | Uninduced | 14.579 |
| SRR8749031 | Uninduced | 12.941 |
| SRR8749032 | Uninduced | 11.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.580 |
| SRR8400027 | Control - Root | 14.060 |