Gene detail

Gene detail information of Glyur000644s00020342

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22570.1	5.00E-90	nicotinamidase 1
NR	AFK42247.1	5.21E-163	unknown [Lotus japonicus]
COG	YP_722137.1	3.00E-66	isochorismatase hydrolase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q8S8F9\|NIC1_ARATH	2.00E-112	Nicotinamidase 1 {ECO:0000305}
trEMBL	tr\|I3SPQ5\|I3SPQ5_LOTJA	2.00E-163	Uncharacterized protein {ECO:0000313\|EMBL:AFK42247.1}

Sequence

Transcript Sequence

>Glyur000644s00020342.1
CTCTTTTAGGAAAAATATTAAATCAACATAACAAAGTTAGATATTTTTGGCGGCGACTGACTTTATTGGAGAAATCTACGTTTTTATCATCCACGTCTGGGAGCAATTTTGACCTTTCCGCTAAAATGCCATAGATAATTAAAGATAAAGATGCAAATAATGGTGTAACATTAATTGAATACACAGATTCCTTGGCATCTTTGAGAAACAGACAGAGAAATTACTGAACAAAAATGGTGTCGCACACAGTTGAACTCCTGAAGAATGAGATTCCTCTGGAGCAGGAATCTGTGGTTTTAACTGAAGACACTGTAAATGGTCTTGTTCTTGTTGATATCATAAATGGCTTCTGCACAGTTGGTGCTGGAAATCTGGCACCAAGAGAGTCCAATAGACAGATTTCAGGAATGATCAATGAATCAGCAAGGCTAGCTAGACTGTTCTGTGAGAAGAATTTGCCAGTTATGGCTTTCCTCGATTCTCACCAGCCTAACAAGCCAGAGGACCCTTATCCCCCTCACTGTATTGTTGGCACTGATGAATCAAATCTAGTTCCAGCGTTAAGGTGGCTAGAGAGTGAAACCAATGTAACAATCAGGCGTAAGGATTGCTTTGATGGATATGTGGGCTCAATAGAAGAAGATGGTTCAAACGTTTTTGTAGATTGGGTTAAGAAGAATAAGATCAAAACAGTGNGTATTAGTCCAATTTGTCTGCTGGTGGTAGGTGTATGCACAGATATCTGTGTTCTGGATTTTGTATGCTCCACAATGTCAGCTAAAAACCGTGGTNTTCTCAACCCTCTAGAAAATGTGGTGCTGTATTCACATGGCTGCGCTACCTTCGACTTCCCTCTGGAGGTGGCCAGAAATACCAAAGGAGCTTTAGCTCATCCTCAGGAGTTTATGCATCACGTAGGTCTGTATATGGCCAAAGAACGTGGAGCCAAGATAGCAAACCAAGTGTTGTTTGGTGCAGCAGAGAAGGTATAAACCTGTTGCGTGGCCCTTCTGAGGAAAGCTCTCTAATTAAGATGCTTGTTAAGGTTGGCCTAATAAGTAGCAAATGGTCATGTGGAGGTGACCCCCCATTAAGACTACATATCATCACATCATGTGTAATTTATAAGTTTTAGTCCCTCGCTTTCCCCACAGAGCTTTTAATCCAAGACTGTCTTGTGAAGTCTAATTTCTGCAGCAGCATATNTTGAAAAGGCTTTCCTTCCTTGCTTATTTAATTTTCTTCAATTCATCATCAAAGGTTGCCGCTGCCATACAATAAAACTGATGCTATGATGAATGGTCCCGAAAAGAAGAAACATAATGAAATATCTGACTCTGTGAAGTCGGTTTGGAGCAATTCTATATTGATTTTTAGGAAAATTTGGAAAACCCAAAAAAAAAAATTTAAAATCTTTTAGGGAGACAGGAGATGCCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00644	28056	30883	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000644s00020342.1	PF00857.15	Isochorismatase	29	208	1.30E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.063
SRR1783600	control	4.093
SRR1783602	moderate drought stress	9.448
SRR1811619	moderate drought stress	9.340

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.342
DRR006520	Root Summer glycyrrhizin high producing strain	9.120
DRR006521	Root Winter glycyrrhizin high producing strain	69.516
DRR006522	Root Winter glycyrrhizin high producing strain	68.061
DRR006523	Root Summer glycyrrhizin low producing strain	23.449
DRR006524	Root Summer glycyrrhizin low producing strain	23.170
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.492
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.046

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.814
SRR2868004	Drought Stress (root)	2.136
SRR2967015	Control (root)	4.068

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.385
SRR9715740	Leaf	9.470
SRR9715741	Leaf	13.584
SRR9715739	Root	2.431
SRR9715742	Root	2.342
SRR9715743	Root	3.367

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.011
SRR8749028	MeJA induced 9h	17.221
SRR8749029	MeJA induced 9h	13.336
SRR8749030	Uninduced	58.622
SRR8749031	Uninduced	29.917
SRR8749032	Uninduced	46.142

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.257
SRR8400027	Control - Root	6.003