Gene detail information of Glyur000644s00020339 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33640.1 | 3.00E-32 | |
| NR | ABD28547.2 | 3.37E-51 | Protein C6orf115, putative [Medicago truncatula] |
| Swissprot | tr|Q6AVK1|COSA_ORYSJ | 2.00E-43 | Costars family protein |
| trEMBL | tr|Q2HVA0|Q2HVA0_MEDTR | 1.00E-51 | Protein C6orf115, putative {ECO:0000313|EMBL:ABD28547.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00644 | 13374 | 14919 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000644s00020339.1 | PF14705.1 | Costars | 1 | 78 | 4.90E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.854 |
| SRR1783600 | control | 26.535 |
| SRR1783602 | moderate drought stress | 12.959 |
| SRR1811619 | moderate drought stress | 12.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.808 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.944 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.864 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.662 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.216 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.925 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 60.233 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 113.893 |
| SRR2868004 | Drought Stress (root) | 75.485 |
| SRR2967015 | Control (root) | 69.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.723 |
| SRR9715740 | Leaf | 6.524 |
| SRR9715741 | Leaf | 11.478 |
| SRR9715739 | Root | 15.073 |
| SRR9715742 | Root | 17.054 |
| SRR9715743 | Root | 17.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.998 |
| SRR8749028 | MeJA induced 9h | 16.643 |
| SRR8749029 | MeJA induced 9h | 25.255 |
| SRR8749030 | Uninduced | 2.280 |
| SRR8749031 | Uninduced | 2.524 |
| SRR8749032 | Uninduced | 5.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 131.399 |
| SRR8400027 | Control - Root | 133.448 |