Gene detail

Gene detail information of Glyur000643s00026948

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39050.1	4.00E-79	HXXXD-type acyl-transferase family protein
NR	AES77678.2	0	anthocyanin 5-aromatic acyltransferase [Medicago truncatula]
Swissprot	tr\|Q940Z5\|PMAT1_ARATH	1.00E-98	Phenolic glucoside malonyltransferase 1
trEMBL	tr\|G7L650\|G7L650_MEDTR	0	Anthocyanin 5-aromatic acyltransferase {ECO:0000313\|EMBL:AES77678.2}

Sequence

Transcript Sequence

>Glyur000643s00026948.1
ATGGCTTCCCTCAACAACAAGAACCACAACAACAACAAAGTTATCAAAATCCACGAGAACTGCAAAGTTACTCCTCCTCCATCTGCAACCCATACATCTCTTCCTCTCACTTTCTTCGACTTGTTATGGCTCAAGCTCCACCCAGTTGAGCGCGTCTTCTACTACACCCTTCCCACCCCACAATCACAGCCTTCCTTTTTCTTCAACCAAGTGGTTCCAAAGCTCAAGTTTTCCCTCTCTCTCACCCTCCAACACTTCCTCCCTCTCGCTGGCAACGTCGTTTGGCCCTCCGAATCCCCAAAACCAATAGTCCAATACACCCCTGGNGATGGTGTTTCTCTCCTCATTGCAGAGTCCGAAACAGACTTCAGCCACATCATTGACAACTCACCCCATGAAGCCTCAGAGTCTCGTTCCTTTGTGCCCCACTTGGAATCAACGGAATCTTCTGCTTCCATCATCTCAATACAAATCACTCTGTTCCCAAAGAGTGGCTTCAGCATCGGCATCAGCACCCACCATGCCGTTCTCGATGGAAGATCCTCAACCATGTTCCTCAAGGCTTGGTCTTCTCTTTGCAAAACCAGTACTGAGGATTCAGAATCTTCATCTCTGGTGCCAGAGTTGCAGCCTCTGATCGACAGGGAAGTTATCAAAGACCCAAAGAGCCTTGGCGTTGCTTTCGCAGACAAATGGACCAACATCGCGCCCAACGAGCGAAGCTTGAAGTTTTCACAGTCCGAACCAAAACTGGAGGACTCGGTTCGAGCCACGTTCGAGCTCACACGTGACGATTTGGGGAAGATAAAGAAAAGGGTGTTGTCCATGTGGGAAGTGTACGAGAACAGAGGAGGAGAAACAGAATCAAACGGTTCAGTTTCAAAGCCACAGACTTTATCATCGTTTGTTCTCACATACGCTTATGTGCTTGTTTGCCTTGCGAAAGCGATTCATGGAGTTGAAAAGGAGAGAGAGAAGTTTGCTTTTGGGATCCCAGTGGATTGCAGGGGAAGGGTAGAGCCAATCCCTCCCAACTATTTTGGAAACTGTGTGTGGGGGTATTTCGTGGATACACACCCAACGGACTTCATAAAGGAAGAAGGGGTCTTTCTTGTTGCAAAGGCCATTCAGGAAAAGATAAAGATGATGAATGAGAAGGGTGTTTTTGCAGGAGCCAGGGATGTGTCTGAAATATTTGGGTATTGTAAAAAGGAACGGATTGAAATAGTGGGAATGGCAGGGTCCAACAAGTTTGGTGTCTATGAGACTGATTTTGGTTGGGGAAGGCCAGCGAAAGTGGAGATAATGTCGGTGGATAGAAACTTAACCATTGGGTTGGCAGAGAGCAGGGATGGGAGTGGTGGGGTTGAAGTTGGTCTCGTTCTTAATAAGCANGTGATGGATCTCTTTACTACTCTGTTTCGTGAAGGACTATGCATTGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00643	125275	126720	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000643s00026948.1	PF02458.10	Transferase	15	471	2.10E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.176
SRR1783600	control	0.184
SRR1783602	moderate drought stress	0.286
SRR1811619	moderate drought stress	0.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.113
DRR006520	Root Summer glycyrrhizin high producing strain	0.139
DRR006521	Root Winter glycyrrhizin high producing strain	0.115
DRR006522	Root Winter glycyrrhizin high producing strain	0.038
DRR006523	Root Summer glycyrrhizin low producing strain	0.229
DRR006524	Root Summer glycyrrhizin low producing strain	0.420
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.955
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.252

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.372
SRR2868004	Drought Stress (root)	1.086
SRR2967015	Control (root)	0.931

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.759
SRR9715740	Leaf	16.022
SRR9715741	Leaf	20.177
SRR9715739	Root	2.471
SRR9715742	Root	1.954
SRR9715743	Root	1.699

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.132
SRR8400027	Control - Root	0.822