Gene detail

Gene detail information of Glyur000643s00026946

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G29590.1	4.00E-60	HXXXD-type acyl-transferase family protein
NR	AES77678.2	0	anthocyanin 5-aromatic acyltransferase [Medicago truncatula]
Swissprot	tr\|Q940Z5\|PMAT1_ARATH	2.00E-69	Phenolic glucoside malonyltransferase 1
trEMBL	tr\|G7L650\|G7L650_MEDTR	0	Anthocyanin 5-aromatic acyltransferase {ECO:0000313\|EMBL:AES77678.2}

Sequence

Transcript Sequence

>Glyur000643s00026946.1
ATGGCTTCCCTCNACAACAACAAAGTCATCAAAATCCATGAGCACTGCAAAGTTACTCCTCCTGCATCTGCAACCCAGACCTCTCTCCCTCTCACTTGGTTCGACTTGTTCTGGCTCAAGTTACACCCAGTTGAGCGTGTCTTCTACTACACCCTTCCCACCCCACAATCACACCCTTCCTATTTCTTCAATAAAGTGGTTCCAAAGCTCAAGTTTTCCCTCTCTCTCACCCTCCAACACTTCCTCCCTCTCGCTGGCAACGTCGTTTGGCCCTCCGAATCCCCAAAACCAATAGTCCAATACACCCCTGGCGATGGTGTTTCTCTCCTCATTGCAGAGTCCGAAACAGACTTCAGCCACATCATTGACAACTCACCCCATGAAGCCTCAGAGTCTCGTGCCTTTGTACCCACTTGGAATCAACCGAATCTTTTGCTTCCGTCATCTCCCTCCAAATCACTCTGTTCCCAAATAGTGGCTTCAGCATCGGCATCAGTACCCACCATGCCGTTCTCGATGGAAGATCCTCAACCATGTTCCTCAAGGCTTGAATCTCCATCTCCATCTCTGGCGCCAGAGTTACAACCTCTGTTCAACAGGGAAATCATCAAAGATCCAGTGAGCCTTGGCGTTGCGTTCGCAGACAAGTGGACCAACATTGCACCAAACGAGCGAAGCTTGGAGCTTTTACCGTTCGAACCAAAACTGGAGGACTCGGTTCGAGCCACGTTCGAGCTCACACGTGACGATTTGGGGAAGATAAAGAAAAGGGTTTTATCCATGTGGGAAGTATCTGAGAACAGAGGAGGAGAAACAGAATCAAACGGTTCTGTTTCAGTAACCCCTTGTTCAAAGCCACAATTTTTATCATCGTTTGTGCTCACATGCGCTCATGTGCTCGTTTGTCTTGCGAAAGCGATTCAGGGAATTGAAAAGGAGAGACACAAGTTTGCTTTTATATTCCCGGTGGATTGCAAGTCAAGGTTAGAGCCTCCAATCCCTCCTAACTATTTTGGAAACTGTGTGTGGGGGAATTTCGTGGATACACACCCAACGGACTTCATAAAGGAAGAAGGGGTCTTTCTTGTTGCAAAGGCCATTCAGGAAAAGATAAAGATGATGAATGAGAAGGGTGTTTTTGCAGGAGCCAGGGATGTGTCTGAAATATTTGGGTATTGTAAAAAGGAACGGATTGAAATAGTGGGAATGGCAGGGTCCAACAAGTTTGGTGTCTATGAGACTGATTTTGGTTGGGGAAGGCCAGCGAAAGTGGAGATAATGTCGGTGGATAGAAACTTAACCATTGGGTTGGCAGAGAGCAGGGATGGGAGTGGTGGGGTTGAAGTTGGTCTCGTTCTTAATAAGCACGTGATGGATCTCTTTACTACTCTGTTTCGTGAAGGACTATGCATTGATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00643	121132	122576	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000643s00026946.1	PF02458.10	Transferase	10	138	9.30E-07
Glyur000643s00026946.1	PF02458.10	Transferase	268	462	9.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.870
SRR1783600	control	0.755
SRR1783602	moderate drought stress	0.393
SRR1811619	moderate drought stress	0.280

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.257
DRR006520	Root Summer glycyrrhizin high producing strain	0.416
DRR006521	Root Winter glycyrrhizin high producing strain	0.473
DRR006522	Root Winter glycyrrhizin high producing strain	0.497
DRR006523	Root Summer glycyrrhizin low producing strain	0.490
DRR006524	Root Summer glycyrrhizin low producing strain	0.156
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.926
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.940
SRR2868004	Drought Stress (root)	0.240
SRR2967015	Control (root)	0.405

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.175
SRR9715740	Leaf	19.665
SRR9715741	Leaf	16.381
SRR9715739	Root	0.609
SRR9715742	Root	2.284
SRR9715743	Root	2.051

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.043
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.014
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.918
SRR8400027	Control - Root	0.670