Gene detail information of Glyur000643s00026942.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02150.2 | 9.00E-34 | plastid transcription factor 1 |
| NR | KHN14028.1 | 4.87E-130 | Transcription factor TCP13 [Glycine soja] |
| Swissprot | tr|Q9S7W5|TCP13_ARATH | 7.00E-44 | Transcription factor TCP13 |
| trEMBL | tr|K7MUZ0|K7MUZ0_SOYBN | 4.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G50371.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00643 | 96429 | 97607 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000643s00026942.1 | PF03634.8 | TCP | 58 | 177 | 1.80E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.032 |
| SRR1811619 | moderate drought stress | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.250 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.277 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.069 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.188 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.117 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 42.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.328 |
| SRR2967015 | Control (root) | 0.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.830 |
| SRR9715740 | Leaf | 39.659 |
| SRR9715741 | Leaf | 41.550 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.860 |
| SRR9715743 | Root | 0.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.036 |
| SRR8749028 | MeJA induced 9h | 1.106 |
| SRR8749029 | MeJA induced 9h | 0.598 |
| SRR8749030 | Uninduced | 0.905 |
| SRR8749031 | Uninduced | 0.823 |
| SRR8749032 | Uninduced | 1.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.177 |
| SRR8400027 | Control - Root | 0.309 |