Gene detail information of Glyur000643s00026937 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74160.1 | 4.00E-67 | |
| NR | XP_003530447.1 | 0 | PREDICTED: protein LONGIFOLIA 1-like [Glycine max] |
| Swissprot | tr|Q9S823|LNG2_ARATH | 2.00E-68 | Protein LONGIFOLIA 2 |
| trEMBL | tr|K7L8P6|K7L8P6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G27191.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00643 | 75748 | 81246 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000643s00026937.1 | PF14309.1 | DUF4378 | 822 | 990 | 1.20E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.491 |
| SRR1783600 | control | 0.562 |
| SRR1783602 | moderate drought stress | 1.191 |
| SRR1811619 | moderate drought stress | 1.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.616 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.541 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.715 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.672 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.074 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.109 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.080 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.896 |
| SRR2868004 | Drought Stress (root) | 4.969 |
| SRR2967015 | Control (root) | 5.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.420 |
| SRR9715740 | Leaf | 1.606 |
| SRR9715741 | Leaf | 2.895 |
| SRR9715739 | Root | 0.226 |
| SRR9715742 | Root | 0.719 |
| SRR9715743 | Root | 0.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.663 |
| SRR8749028 | MeJA induced 9h | 2.406 |
| SRR8749029 | MeJA induced 9h | 1.405 |
| SRR8749030 | Uninduced | 1.843 |
| SRR8749031 | Uninduced | 1.671 |
| SRR8749032 | Uninduced | 3.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.844 |
| SRR8400027 | Control - Root | 0.821 |