Gene detail

Gene detail information of Glyur000643s00026936

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26190.1	1.00E-60	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_007139459.1	3.32E-139	hypothetical protein PHAVU_008G031500g [Phaseolus vulgaris]
trEMBL	tr\|V7B3J8\|V7B3J8_PHAVU	1.00E-139	Uncharacterized protein {ECO:0000313\|EMBL:ESW11453.1}

Sequence

Transcript Sequence

>Glyur000643s00026936.1
CAAGAACCTTCACTTATTACGGGACACAACTTTTCAGTATTCCCCACTTCATCTTTTCTGAACTTCTTCCTCTCCTCCAACTATTCCTAGTCAAAAACGAACCACCCTGGAAACTGAAGGGTCAACACTTTATCTTTGTTTAAGGTTTTTGTTTTTTCTTCATCTTTCTATATCCTCGTGTGCACGTCAAGAAGAATAAGAAAAGACCCACTCTTCTTCTCCCCTGCAGAGACTTGGTTTTGCTCATCGAATTCATTGGGGCACAGACAAGTGGGACAGTAGAGCACGCTATAAAAACCCTAATCAAAAGATGGAACCTCTCCATGCAAAGCAAAGAAAGAAAATAGTTTCTAATGTACCAAAGAAAGGTATCAAAAATGCATTGGAGTCAACTGTATCAGAGGATTCTCTTACGGATGAAATGAGAAAATTATCAGTTGCTGCCACAAATGAAGAACATAGGCAAAACAATTTGCGAGTTTCTTCAATTGGAATACCGGCTAGATGTTTGAAGAGAAAGCTTCTTGTTCTTGATATAAACGGGCTTCTTGCAGACATAGTTTCTCCCCCTCCAAAGCAATATAAAGCAGATGCAACCATAAGGGGGAAAGCAGTATTCAAAAGGCCTTTTTATATGGAGTTTCTGGACTTCTGCTTTGAGAATTTTGAAGTGGCTGTGTGGTCTTCAAGAATCAAGAAAAATATCGACCTTGTCATTGATTACTTGATGAGAGACATGAAAGAGAGGTTGTTGTTTTGTTGGGATCTTTCATATTGTACTGAAACGAGTTTCAAAACTCTTGAAAACAAGCACAAGCCACTGGTATTTAAGGATCTGAGGAAAATTTGGGAGAAGCATGATCCTAATCTTCCGTGGGAGAAGGGATACTACAATGAATCCAATACGTTGCTGTTGGACGATTCACCCTACAAGGCATTACTTAATCCTCCACACACCTCAATTTTTCCGCCTACATTCAGATTTCAGAATAAGAAGGACAATTCACTAGGTGCTGGAGGTGATCTAAGACAATATCTAGATGGATTGGCAAATGCTGAAAATATGGTGGANTACATTGAGCAACACCCATTTGGTCAAGAAGGTATCAATGAAAAAAGTCAATCTTGGGACTTCTACCTCAAGGTCATTAAGAGTCTTCCTGACTCTCAACCTGAAAAGTGAGAATTAGTTATCGTGTGGTCTTTCAACTGGGACATCAATGCAAACACTCTGCCTGCCAAACGAGCCAAACTAGTTTATTTTTGCATAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00643	60859	65625	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000643s00026936.1	PF03031.13	NIF	70	247	1.30E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.987
SRR1783600	control	4.127
SRR1783602	moderate drought stress	4.743
SRR1811619	moderate drought stress	4.691

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.164
DRR006520	Root Summer glycyrrhizin high producing strain	8.193
DRR006521	Root Winter glycyrrhizin high producing strain	2.273
DRR006522	Root Winter glycyrrhizin high producing strain	2.147
DRR006523	Root Summer glycyrrhizin low producing strain	19.643
DRR006524	Root Summer glycyrrhizin low producing strain	18.076
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.770
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.957

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.877
SRR2868004	Drought Stress (root)	45.222
SRR2967015	Control (root)	46.351

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.076
SRR9715740	Leaf	14.379
SRR9715741	Leaf	36.989
SRR9715739	Root	4.835
SRR9715742	Root	25.329
SRR9715743	Root	22.684

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.240
SRR8749028	MeJA induced 9h	18.855
SRR8749029	MeJA induced 9h	23.016
SRR8749030	Uninduced	8.744
SRR8749031	Uninduced	5.398
SRR8749032	Uninduced	4.688

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.848
SRR8400027	Control - Root	16.878