Gene detail information of Glyur000643s00026932 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19390.2 | 3.00E-40 | Rho GTPase activation protein (RhoGAP) with PH domain |
| NR | AET00208.2 | 2.24E-75 | GTPase-activator protein for Rho-like GTPase family protein [Medicago truncatula] |
| Swissprot | tr|Q8RWQ4|RGAP7_ARATH | 3.00E-61 | Rho GTPase-activating protein 7 |
| trEMBL | tr|G7K336|G7K336_MEDTR | 8.00E-76 | GTPase-activator protein for Rho-like GTPase family protein {ECO:0000313|EMBL:AET00208.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00643 | 26275 | 27994 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000643s00026932.1 | PF14389.1 | Lzipper-MIP1 | 63 | 147 | 8.60E-20 |
| Glyur000643s00026932.2 | PF14389.1 | Lzipper-MIP1 | 63 | 110 | 1.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.252 |
| SRR1783600 | control | 0.277 |
| SRR1783602 | moderate drought stress | 1.004 |
| SRR1811619 | moderate drought stress | 0.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.698 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.333 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.891 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.787 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.386 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.525 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.531 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.967 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.452 |
| SRR2868004 | Drought Stress (root) | 1.376 |
| SRR2967015 | Control (root) | 1.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.695 |
| SRR9715740 | Leaf | 0.097 |
| SRR9715741 | Leaf | 12.769 |
| SRR9715739 | Root | 0.062 |
| SRR9715742 | Root | 4.931 |
| SRR9715743 | Root | 4.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.006 |
| SRR8749028 | MeJA induced 9h | 0.042 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.822 |
| SRR8400027 | Control - Root | 2.438 |