Gene detail

Gene detail information of Glyur000642s00034723

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39785.1	1.00E-66	Protein of unknown function (DUF1666)
NR	KHN07846.1	0	hypothetical protein glysoja_042628 [Glycine soja]
trEMBL	tr\|K7N184\|K7N184_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G04913.1}

Sequence

Transcript Sequence

>Glyur000642s00034723.1
ATCAAATTCTCATTTATTGTCCAAATTCCAAAACCCTCAAGTTGCTTTCTTTACTTGTACAAAATATATGCGCGATCAATCAAGCATTTTTTTTGGGTCCAAAATCAAATTATGCCCAGATTTTATTCTGCCACTGATTTCACTGTGCACTAGTAGTGGAGGGAGAGAGAGATTCACTATATGCCATCATAGTGGATGAATCTTTGTATGGGGGAAATTCTCCATATAACTTGTTTTGGTTTGAAATCTTTTGGAAATATAAACACAATCACAAGTGGAGAGGGTTGGTTGATCATTGATAATTTGATGGGTACCAAAAACAAAAACCTCCTTGTTATGCTTAAAACTCACATTGATTCAATCAACTTGTGTTTAGGTCATGATGTTGTTTATGAAAACTTAGCTTCTCTTTGGGTTCTCTTCTGCAACTACGTTCTTTATTCCATGGGGCTGATACTCACATACATCTTCAGGTTTCAAAGAGACGATAGGAAAAAGGAGCACCTTGTTCCAGCTGAGAAAACCAAGAGGAATCAATTTGGAGATTCTTCTGAGATTGATGGGTTCACAGAAGAGCTGGCCAATTTGCTGTTTTTACCAAGCTGTGAAGATTTACATGTAGCAAGTGAAGAAAGAGAAGGAGAAAAAGATTGCAATGTTTCAATAGAGGAGAAAGACACTGATATTCATGAAGATAGTAATAAGAAAAGAGAAGGAGAAGCAAAAGGGCATCATGTTTTCATGGAGACTCTCTTCTCAGATGTTCATGAAGATCATGTTGAGAAAACTGATGAAACAGAGTGCTCTGTTTTCATGGATTGCTATTTCAGTTTTCATCAAGATGGTAGGAAAAGTGTAGAAAAAGTTCAAGAAGAAGAAGAAACAGAAGGGAATCATGTTTTCATGGAGACTCTCTCAGATGTTCATGAAGATCATGTTGAGAACGAAACAGAGTGCTCTGTTTTCATAGAAAAAGTTAAAGTTAAAGAAGAAAAAGAAGAAGAAACAGAAGAAACTTTTGTCATGGATACTGGCTCTGCTACAACCACAAGCAAGTGTGAAATAGGTGGTTTGGAAGAAGAACCCATGACCATGTTGACCTTCACTTTTCGAGGAAACTACACAGGTGATGCAAATGTTTCAGATAATGCATTCTCCAGCACTGCAAATATAGCCAAAAAGGAACAACTTTCAGAGTGTAACTTAGAAAAAGGCCATGTTTCTCAAGAAGAAGAGGAAGAAGAGGAATCTGTTCAAGAACAGAAAACATCCACTTTTGCTGGTCACTTTGGATTGGATGGAAGTGATTCATGTGATGATGATGGTTATCTTCTGTATGATGATGATAACTCATTGTTGCCATCTGATTCAGACACAGAATCATCTAGCTCCAGTGATGATGATCTTGTGTGGGGCAACAGCAACAACAATGATGATTCAGTGACACATCAGATAATGGGTTCTAACAATCCATGTGAAGGATTTGANCCTGAAAGTAGTCTTGAGGAGGCTATTGAAGATGTGGAGGAAATTCAATTTTCTTGTGATAGAGAAGAGCTATGTGAAGGAACCATGTGGGAAGATAAGTTGGATGAATCGTATTTTGATGATGATGATGACGAGGATGAGGATGAGTGGGAGAATGATGAGTTGGTGCAAAAGCTCAAGTTGGAACTGAGAAATGCAAGACAAGGAGGACTTGCAACAATTTTGGAAGAGGAGGAGGAAGATGAGGAATCAGTGCTTCCAAAAGTTGTTGTTGAAGGTCTTCTAAAGCCATTGGGTGGCACTATTAAAGAGAAGGTTGAATACAAAGATCACATTGTTGAGATTCAAAAGGTTTACAGGTGCTATGCAGAGAAAACAAGGAAACTGGATGTCTTGAATTACCAAGCCATGCATGCAATAGGTCTACTTCAACTAAAAGACCCTCTAAAATTAATGTTAGTGCCAAAATCTACCGTCCCATATGCNAAGGCACTAGTAGTCTCTCAGAATTTGTGGCCACGTAAAGCACCAAAGCACATATCTGACCCAATGTTGAAGCTTGTTTGTCTCTCGTGGGAAATCCTCTGTTGGCAGCAAAGGAAAATCCAGGAGCTAAAAAATTATGATTCACAACGGCCCCGTCGGTATAACCTAGTTGCTGGTGAGTTTCAGCATTTTCAGGTCCTCATGCAACGTTTTATTGAGGATGAGCCATTTCAACAAGGCCCCTGCAGGNTTCAGAACTATGTCAAGAACCGTTGTGTCATTCGCAACTTGCTCCAAGATAAGAAAATAATGAAGTGGGGTGAAGAGGATGCAATTGGGAGTGAAAGGTTAGCACAGATCATCAAGGAATCCATGAAGGTGTTCTGGGAGTTTGTCCGAGCAGATAAAGATTATGGGAATGTGTTCCATAAAGTACTTCATCGAAATGGGAATGGTGTCAAGGACACAGAAATTTCAGATCTTCTAGGGGATATTCAAACCCAACTACAAAAGAAGGAGAGAAAGCTCAAGGACANAGTGAGAAGTGGGAATTGCTTTGTAAGGAAGTTCAAAAAACACAATGAGGATCAAATTCAACTTGATCATGAGCAGTTGCTTGCTCAAGTGGGATTGAGGTTGGTTTCAAGGGTGATAAACATGAAAAAATTGAGAAAAGATCAGCTAGTATGGTGTAGTGAAAAGCTAAACCAAATCAATTTTGTAGGCAGGAAGATCCAGGTGGAGCCTTCTTTTTTGCTTTTTCCTTGTTGATTGATTCATCAGAGTTCTTATAGATGAAGAGATACTTATTCATGCAGAAAATTAGATAACAACATACGTAGAAGTGTCTACTTACAAAATCAGTGTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00642	89138	93559	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000642s00034723.1	PF07891.7	DUF1666	619	849	6.80E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.122
SRR1783600	control	0.122
SRR1783602	moderate drought stress	0.424
SRR1811619	moderate drought stress	0.401

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.418
DRR006520	Root Summer glycyrrhizin high producing strain	2.370
DRR006521	Root Winter glycyrrhizin high producing strain	1.744
DRR006522	Root Winter glycyrrhizin high producing strain	1.703
DRR006523	Root Summer glycyrrhizin low producing strain	9.536
DRR006524	Root Summer glycyrrhizin low producing strain	9.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.302
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.851
SRR2868004	Drought Stress (root)	3.847
SRR2967015	Control (root)	2.980

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.908
SRR9715740	Leaf	7.985
SRR9715741	Leaf	16.121
SRR9715739	Root	0.135
SRR9715742	Root	0.851
SRR9715743	Root	0.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.257
SRR8749028	MeJA induced 9h	0.440
SRR8749029	MeJA induced 9h	0.145
SRR8749030	Uninduced	1.995
SRR8749031	Uninduced	0.053
SRR8749032	Uninduced	0.230

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.511
SRR8400027	Control - Root	1.645