Gene detail

Gene detail information of Glyur000642s00034719

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23340.2	6.00E-169	Protein of Unknown Function (DUF239)
NR	XP_007157356.1	0	hypothetical protein PHAVU_002G063400g [Phaseolus vulgaris]
trEMBL	tr\|V7CJ81\|V7CJ81_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29350.1}

Sequence

Transcript Sequence

>Glyur000642s00034719.1
CGAAATTTTTAAATTTGGCACGATTTCATCACTATTCTGGCATTTATCAGTGCTCCAACCCACATGGCCAAAACTTCAACATAACCCAACCTCTGTTACATGTATTTTAATCAGCTTGCGTAGCGCCTGGTAGCTCAAGTTGTCAGTAATAAAAACCCCAAGTTTTAGAAGCTTTGAACACTAGACTCAAGAGAGAGAGAGAGAGAGAGAGAGAGAATAGAAGGACGTTATTCTGTGCTTCCAAGGCATTGAAAATGGTGAAGGGATTAATTAATCTTTCTTAGAATACTCATTTATGTGTTGGATGCACTTGGTGGNGGGAGATGTGTTTCCCTTGGCACAATCAAAATCTAGGAATACACACAAGTTTTTTGTTTTTGTTGATGGAAGAAGAAGACAAGGCCAATGTGAACGTATTCACACGGATTCATCAATAGAAACAAGGAGGCTAAATTTCTCAAGCATGGATTTTAGCTGGTGTTTGAGCTCCCCAATCATTTTTTCCACCACCCTTGTACATTTTCTTCTTGTTGTTTCTCTGTTTTGTCCTGTTTCTTCCCACCACTCAGAAATTAGCAACACCCCAGNTGCCAATAACACTTTAAGGCCACAGGAAGAGGTGCACAAGTTGAACATCATAAGAACTCGTCTTCAGCAGATCAACAAGCCTGCTACTAAAACAATTCAGAGTCCTGATGGTGATATCATAGANTGTGTTGTATCTCATCAACAACCAGCTTTTGATCACCCTCTATTGAAAGGACATAGACCACTGGATCCTCCAGAAAGGCCCAAAGGACATAACAAAATGGACATATTGAGTGAGAATTTTCAGTTATGGACCTTGTCAGGGGAATCATGTCCAGAAGGTACAATTCCAATTAGAAGAACAACAGAACAAGATATGTTAAGGGCTAGTTCTGTCAGCAGATTTGGAAGAAAAATAAGAAGACGTGTTAGAAGGGACACAAACAGCAATGGACATGAGCATGCAGTTGGGTATGTGAGTGGAGATAAGTATTATGGAGCAAAGGCTAGCATAAACGTGTGGGCACCACGCGTGGCAAATCAATATGAATTCAGCTTGTCCCAAATGTGGGTCATCTCTGGTTCATTTGGAGACGATCTCAACACCATTGAAGCTGGTTGGCAGGCATTTGACATATTCAACCATCTACCACCCATTAGTGATGCATATCAAGCAACCGGATGCTACAATTTACTGTGCTCAGGCTTTGTTCAAACTAACAATAAAATTGCAATTGGGGCTGCAATCTCTCCAACTTCTTCATATGGTGGTGGGCAATTTGATATTAGCTTGCTCATCTGGAAGGATCCAAAGCATGGGAATTGGTGGCTTCAATTTGGATCCGGAATCCTAGTTGGGTACTGGCCATCATTCTTGTTCACACACTTAAGGGATCATGCAAGCATGGTGCAATTTGGTGGAGAAATTGTGAATTCAAGGCAAACAGGGTCTCACACTTCAACCCAAATGGGTAGTGGGCATTTTGCTGGAGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATATGCAAGTGGTGGATTGGGATAACAACTTGATACCCTTGTCAAATCTACGGGTTCTAGCGGATCACCCCAATTGCTATGACATACAAGGAGGGATTAATAATGTTTGGGGGAATTACTTTTACTATGGTGGACCTGGGAGAAATGTTAGGTGTCCCTAAGGGAATCATGAATTGAATTATATATACAAGTCAGTGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00642	11980	16152	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000642s00034719.1	PF14365.1	DUF4409	129	237	2.10E-37
Glyur000642s00034719.1	PF03080.10	DUF239	242	464	9.40E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.844
SRR1783600	control	0.879
SRR1783602	moderate drought stress	0.827
SRR1811619	moderate drought stress	0.862

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.688
DRR006520	Root Summer glycyrrhizin high producing strain	1.528
DRR006521	Root Winter glycyrrhizin high producing strain	0.127
DRR006522	Root Winter glycyrrhizin high producing strain	0.124
DRR006523	Root Summer glycyrrhizin low producing strain	1.672
DRR006524	Root Summer glycyrrhizin low producing strain	1.547
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.555
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.507

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.651
SRR2868004	Drought Stress (root)	14.810
SRR2967015	Control (root)	11.280

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.072
SRR9715740	Leaf	7.479
SRR9715741	Leaf	4.613
SRR9715739	Root	0.414
SRR9715742	Root	1.198
SRR9715743	Root	1.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.959
SRR8749028	MeJA induced 9h	0.219
SRR8749029	MeJA induced 9h	0.711
SRR8749030	Uninduced	0.223
SRR8749031	Uninduced	0.535
SRR8749032	Uninduced	0.077

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.889
SRR8400027	Control - Root	4.459