Gene detail information of Glyur000641s00026556.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51780.1 | 3.00E-27 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | AES62639.2 | 2.27E-98 | transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9FLI1|BH036_ARATH | 3.00E-37 | Transcription factor bHLH36 |
| trEMBL | tr|G7ID49|G7ID49_MEDTR | 8.00E-99 | Transcription factor {ECO:0000313|EMBL:AES62639.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00641 | 97293 | 98665 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000641s00026556.1 | PF00010.21 | HLH | 73 | 125 | 3.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.952 |
| SRR1783600 | control | 6.011 |
| SRR1783602 | moderate drought stress | 10.359 |
| SRR1811619 | moderate drought stress | 10.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.020 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.177 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.350 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.337 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.115 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.138 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.220 |
| SRR2868004 | Drought Stress (root) | 44.133 |
| SRR2967015 | Control (root) | 35.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.294 |
| SRR9715740 | Leaf | 0.785 |
| SRR9715741 | Leaf | 1.216 |
| SRR9715739 | Root | 3.299 |
| SRR9715742 | Root | 9.108 |
| SRR9715743 | Root | 6.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.052 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.169 |
| SRR8400027 | Control - Root | 23.048 |