Gene detail

Gene detail information of Glyur000641s00026555

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51790.1	2.00E-33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_003536494.2	4.52E-90	PREDICTED: transcription factor bHLH36-like [Glycine max]
Swissprot	tr\|Q9FLI0\|BH120_ARATH	6.00E-38	Transcription factor bHLH120
trEMBL	tr\|K7LL60\|K7LL60_SOYBN	2.00E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G38620.2}

Sequence

Transcript Sequence

>Glyur000641s00026555.1
CTCAGAACCTATAGTGAGTTATGCTTTACGCTCAAACCCTATCAACCATATCCATTAATGGCATCCATCACTTGGGAATTGTTTTCTTAATTAGCTAGAGATCTCAGTGATGTAAGAAATATTTTCCAGCATACATCGATCCTTTTATAATATCCCCCATATATCAAAAAGATACATACACGATCCCCACGAGAAGTGATCGATCATGCTGCCACCTAAACAACAAGATGAGATGTATACTCACAACAAATCGTCAAAATTAGTTCAGCAACAAAAACCACCGGCTTCACACGAAGATGATGATGATTCTCTGAAGAAGCTAATACATAGAGACTTAGAAAGACAAAGAAGGCAAGAAATGACCAAACTTTATGCCTCCCTCAGATCTCTACTCCCACTTGAATACATCAAGGGAAAGCGGTCGATATCGGATCACATGAATGAGGCTGTCACATATGTCAAACATCTACAGAGTAAGATGAAGGAATTGAGTGACAAGAGGGATAAGCTGAAGAAGTTGTGTAACAAAATTACCTCTTCTAGTACTATTGCTGCTGCTGAATATCCACCAACAAATGTTTTGGTTCATCAATATTTGGGTGGGCTTGAGGTTGTGCTCAGTAGAAGCATCGAGGATCAAAGGTTTCCAGCTCTATCTAGGATCTTGGATATGCTGCTCCAAGAAAAGATTACTGTTGTTAACTGTGTTTACTGCAAAGTAGAACAACGGCTGATATACACCATCCAATTACAGATTTCTGATGCGACCTGCTTCGAGCCCTCTGCACTGCAAAGAAAATTGTCAGAAGCAATTTCATCATCGTGCGATTTGACAGGCCTGTTGATTTTAATTAGCATGCCTTTTGGAAGAAAATCACTCAAAATGAAAGAAAATCAGCGCATAGCATCGGCTACTTCGGACAATGATGAGAAGAAGATCATTCGTAGGGAAGTTGAAAGACAAAGGAGGACACAAATGTCTATTCTATGTGCATCACTCCGTTCTTCACTCCCTTCCGAGCTCATCAAGGGAAAGCGTTCGGCATCAGATCACATAGGCGAGGCTGCAAATTATATCCAATTTTTGAAGCAAAGGATTAGTGCACTCCAAATCAAGAGGGACAGGCTCAAAGAAATGGTTAGTTCAAGAAATGTAATTGAACCAGCAGATCATGCTTCAACTTCAAGTACTGCACCAGCTGTGAAGTGTGTCAACATCAATCTCATTCCAGGCGGCGTGGAAATTATTGCCATATGTAGTGGTAGCAGTTTACTTTTATCAGATTTAATGGAGATAATACTTGAAGAAGGATGTGACGTTGTTGACTGTGTTTCGACCCAAGTAAATGGGAGGATATTTCATACTATTAAGTCTCAGGTGGAGGACATGACACGCCTTGATCTTNCTAGGCTGCAATACAAACTGGATCATGCAATAATCTTATTAGATACAATGAATCCTTTACAGCCTGGTGATGATTTCTACTTTCAGATTTCTTCATCTGATAATTATTATTCTCTACCAATCCTAGCAACCACAGAAGATCAGATCTTGCATGATCCTGTGATGGATGATGGCACTGGTGGTACTACTCTTCCTTGTTCAAGTACTCAAAAGGGATCAAAGGGTAAGCAGCGAAAACAGTTATCATTACCTGCTAGTGCTGCAGCTTGGGGAACAGAAGATAATTATAAGAACACCACAGATGTTGAAAACAAGAAGTGGATGCATAGGGAGATCGAAAAACAAAGAAGGCAAGAAATGGCCAGGCTTTGCACCTCCTTTAGATCTCTTCTACCTTTTGAATATATTAAGGGAAAGCGTTCCACTTCAGATTACATGCACGAGGGTACTAATTACATTAAGTACCTTCAGAATAAGGTGAAGCAGTTGCAGGCAAAGAGGGATGAGTTAATGAAGTTGTCTAATTTGAGTAGTCCTTTTGGCCCTCCTGAGAGTACTGGAAGCTTTGTTGTTGTTGTTCACCCTTGCTCCGGAGGCGTTCAGATTAAGTGTAGTTATAGCTTGAAATGTGTGTTTCCTTTGTCAAGAGTGCTCAACATAGTGCTTAAAGAAGGGCTTAATGTGGTCAACTGTGTTTCCATCAAAACAGATGACATGTTCATACACACTATCCTATCAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00641	74852	87217	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000641s00026555.1	PF00010.21	HLH	39	89	3.60E-08
Glyur000641s00026555.1	PF00010.21	HLH	248	294	3.50E-05
Glyur000641s00026555.1	PF00010.21	HLH	508	557	5.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.931
SRR1783600	control	3.897
SRR1783602	moderate drought stress	7.760
SRR1811619	moderate drought stress	7.760

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.153
DRR006520	Root Summer glycyrrhizin high producing strain	1.115
DRR006521	Root Winter glycyrrhizin high producing strain	3.015
DRR006522	Root Winter glycyrrhizin high producing strain	2.881
DRR006523	Root Summer glycyrrhizin low producing strain	0.878
DRR006524	Root Summer glycyrrhizin low producing strain	0.869
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.043
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.607
SRR2868004	Drought Stress (root)	15.487
SRR2967015	Control (root)	21.710

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.114
SRR9715741	Leaf	0.173
SRR9715739	Root	0.341
SRR9715742	Root	1.679
SRR9715743	Root	1.116

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.067
SRR8749028	MeJA induced 9h	0.020
SRR8749029	MeJA induced 9h	0.151
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.148
SRR8400027	Control - Root	6.912