Gene detail

Gene detail information of Glyur000641s00026554

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52540.1	1.00E-89	Protein kinase superfamily protein
NR	XP_004496638.1	0	PREDICTED: PTI1-like tyrosine-protein kinase At3g15890-like [Cicer arietinum]
COG	YP_004571825.1	6.00E-23	serine/threonine protein kinase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q9LSC2\|Y3589_ARATH	3.00E-108	PTI1-like tyrosine-protein kinase At3g15890
trEMBL	tr\|G7ID34\|G7ID34_MEDTR	0	Pti1-like kinase {ECO:0000313\|EMBL:AES62624.2}

Sequence

Transcript Sequence

>Glyur000641s00026554.1
ATGCACTTGAAATGTTTGTGTTGTTTTCTCTCTGAAGAAGAGCAAAACCAAAGACGGAATGTCGATGACAAGAAGAATAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTTCGTGCAACAAACAACTTTCATCAAGATAATAAGATTGGAGAGGGTGGTTTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCATCGCTGTAAAGCGCTTGAAGACGATGACCGCGAAAGCAGAGATGGAATTTGCAGTGGAAGTGGAAGTACTTGGAAGGGTGAGGCATAAGAATTTGTTGGGGTTGAGAGGATTCTATGCAGGAGGAGAGGAAAGGTTGATTGTGTATGATTACATGCCTAATCACAGCTTACTCACCCATTTGCATGGTCAACTTGCCACTGATTGTTTACTAGATTGGCCTAAAAGAATGAACATAGCAATTGGAGCAGCTGAAGGTTTATTGTATTTGCACCATGAAGCAAATCCTCACATCATTCATAGAGACATAAAGGCAAGCAATGTTCTTTTAGACACTGAATTTGAAGCAAAGGTTGCTGATTTTGGTTTTGCAAAGCTAATACCAGAGGGTGTAAGCCATCTCACAACAAGGGTTAAAGGCACCCTTGGATATTTGGCTCCAGAATATGCCATGTGGGGGAAGGTTTCTGAGAGTTGTGATGTTTACAGCTTTGGGATTTTGCTTTTGGAGATTATCAGTGCCAAGAAACCAATTGAGAAACTCCCTGGTGGAATAAAAAGGGATATTGTTCAGTGGGTCACACCATATGTCCAAAAGGGTGTCTTCAAACAAATTGCAGATCCAAAGTTGAAGGGGAATTTTGATTTGGAGCAATTGAAATCAGTGGCCATGATAGCTATGAGGTGCACAGATAGTAGCCCAGAGAAGAGGCCTAGCATGGTAGAGGTGGTGGAGTGGCTTAAGGGTGGTGTTGGGAAGAGGAAAAAGGAGATTCCAAATTTGAGTAACAAGAATGGAGACGAGGAAAATGACAAAAACTATGAAGAGATTGGAACAATGCAGTCCAAGTTGAAAATACTAAGTGATAATGGTAGGCGCAAAATAAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00641	67666	69230	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.10.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000641s00026554.1	PF00069.20	Pkinase	47	312	1.90E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.959
SRR1783600	control	2.932
SRR1783602	moderate drought stress	4.703
SRR1811619	moderate drought stress	4.635

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.662
DRR006520	Root Summer glycyrrhizin high producing strain	2.433
DRR006521	Root Winter glycyrrhizin high producing strain	2.428
DRR006522	Root Winter glycyrrhizin high producing strain	2.255
DRR006523	Root Summer glycyrrhizin low producing strain	1.905
DRR006524	Root Summer glycyrrhizin low producing strain	1.912
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.419
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.338

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.011
SRR2868004	Drought Stress (root)	70.549
SRR2967015	Control (root)	50.658

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.088
SRR9715740	Leaf	0.113
SRR9715741	Leaf	0.536
SRR9715739	Root	0.412
SRR9715742	Root	1.002
SRR9715743	Root	0.534

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.251
SRR8749028	MeJA induced 9h	8.496
SRR8749029	MeJA induced 9h	12.378
SRR8749030	Uninduced	11.816
SRR8749031	Uninduced	14.660
SRR8749032	Uninduced	6.780

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.894
SRR8400027	Control - Root	16.364