Gene detail

Gene detail information of Glyur000641s00026553

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62180.1	2.00E-88	carboxyesterase 20
NR	XP_004496637.1	0	PREDICTED: carboxylesterase 1-like [Cicer arietinum]
COG	YP_706618.1	6.00E-21	esterase [Rhodococcus jostii RHA1]
Swissprot	tr\|Q0ZPV7\|CXE1_ACTER	1.00E-123	Carboxylesterase 1
trEMBL	tr\|I1NGN1\|I1NGN1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G29190.1}

Sequence

Transcript Sequence

>Glyur000641s00026553.1
ATGTCACTACGCCTTGCGGCTACTGCATTTTCCTTACATCTCCTTCTCTTACTTGTTAACTCATCCATGGATCCTTACAAGGCACTCCACATCATTCTCAACCCAAACGGCACCCTCACGCGCTTGGAAACACACCCACAGAGCCCTCCCTCACCCGATCCCACGCTCCCTACACCCGTTCTCTCCAAAGACCTCACCATTAACCCATCAAAACACACATGGGCTCGGATCTACCTACCCCACAAAGCACTCGATAATAATAACCACCATCGCCACCTCAAGCTACCCCTCATCGTCTTCTACCACGGTGGCGGCTTCATTTTCTACAGCGCCGCCTCCACTTACTTCCACGATTTCTGCGTCAACCTCGCCGACCACACCCAATCCGTCGTCGTTTCGGTCGAATATCGTCTCGCCCCCGAGCACCGCCTTCCCGCGGCGTACGAGGACTCCGTGGAAGCGCTTCACTGGATCAAAACCTCCAACGACCCGTGGTTGACGCGCCACGCTGATTACTCCCGTTGCTATCTCATGGGGGAGAGTGCCGGGGGTAACATTGCCTACAACGCGGGTCTACGTGCAGCCGCGGAGGTGGATCAGATCAAACCGCTGAACATAAAAGGGATGATACTGATCCAGCCGTTTTTCGGTGGGACCAAGAGGAGCCCATCTGAGTTGAGGCTCGCTGAGGATGGGACCCTGCCTCTGATCGTTACTGATCTGATGTGGAATCTGTCTTTGCCTGTGGGCGTTGACCGTGACCACGAGTATTCCAATCCGACGGTGAAGGGTGGCGCTAAGGTTTTGGATCAGATCAAGTTGCGTGGGTGGAGGGTTGCGGTGTTTGGGTGTGATGGGGACCCACTGGTGGACCGTCAGAAGGAGTTGGTGGAACTGATGAGGGACAAAGGTGTCCACGTGGTGGGGCAGTTTTACACTGGGGGTCGACATGGCATTTTTGTGGGTGACCCTTCAATGTCCACCAAGGTATTCGACTTAGTCAAGAGCCTTCATCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00641	65224	66243	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000641s00026553.1	PF07859.8	Abhydrolase_3	98	320	2.20E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	183.237
SRR1783600	control	183.323
SRR1783602	moderate drought stress	71.818
SRR1811619	moderate drought stress	66.444

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.990
DRR006520	Root Summer glycyrrhizin high producing strain	41.868
DRR006521	Root Winter glycyrrhizin high producing strain	10.976
DRR006522	Root Winter glycyrrhizin high producing strain	10.677
DRR006523	Root Summer glycyrrhizin low producing strain	17.495
DRR006524	Root Summer glycyrrhizin low producing strain	17.420
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.648
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.494

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.889
SRR2868004	Drought Stress (root)	28.557
SRR2967015	Control (root)	37.441

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.921
SRR9715740	Leaf	8.438
SRR9715741	Leaf	15.939
SRR9715739	Root	129.442
SRR9715742	Root	41.930
SRR9715743	Root	56.451

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.104
SRR8749028	MeJA induced 9h	25.167
SRR8749029	MeJA induced 9h	18.754
SRR8749030	Uninduced	9.599
SRR8749031	Uninduced	4.408
SRR8749032	Uninduced	8.690

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.413
SRR8400027	Control - Root	52.338