Gene detail information of Glyur000641s00026550.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51810.1 | 2.00E-48 | gibberellin 20 oxidase 2 |
| NR | NP_001238302.1 | 1.06E-106 | gibberellin 20-oxidase 2 [Glycine max] |
| COG | YP_006370287.1 | 1.00E-08 | putative iron/ascorbate oxidoreductase [Tistrella mobilis KA081020-065] |
| Swissprot | tr|Q39111|GAOX2_ARATH | 1.00E-56 | Gibberellin 20 oxidase 2 |
| trEMBL | tr|C6ZIG0|C6ZIG0_SOYBN | 4.00E-107 | Gibberellin 20-oxidase 2 {ECO:0000313|EMBL:ACJ76438.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00641 | 33046 | 34785 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05282 | E1.14.11.12 | EC:1.14.11.12 | Diterpenoid biosynthesis | map00904 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000641s00026550.1 | PF14226.1 | DIOX_N | 63 | 169 | 1.70E-27 |
| Glyur000641s00026550.1 | PF03171.15 | 2OG-FeII_Oxy | 170 | 201 | 4.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.055 |
| SRR1783600 | control | 0.116 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.963 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.899 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.447 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.260 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.246 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.246 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.217 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.173 |
| SRR2868004 | Drought Stress (root) | 3.250 |
| SRR2967015 | Control (root) | 2.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.786 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.229 |
| SRR9715739 | Root | 0.035 |
| SRR9715742 | Root | 4.450 |
| SRR9715743 | Root | 3.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.975 |
| SRR8400027 | Control - Root | 3.033 |