Gene detail information of Glyur000640s00024129 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73805.1 | 9.00E-46 | Calmodulin binding protein-like |
| NR | XP_003620423.1 | 2.82E-138 | hypothetical protein MTR_6g083730 [Medicago truncatula] |
| trEMBL | tr|G7KMM8|G7KMM8_MEDTR | 1.00E-133 | Calmodulin-binding-like protein {ECO:0000313|EMBL:AES76641.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00640 | 128507 | 133388 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000640s00024129.1 | PF07887.6 | Calmodulin_bind | 68 | 180 | 6.50E-37 |
| Glyur000640s00024129.1 | PF07887.6 | Calmodulin_bind | 183 | 268 | 4.30E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.060 |
| SRR1783600 | control | 0.030 |
| SRR1783602 | moderate drought stress | 0.031 |
| SRR1811619 | moderate drought stress | 0.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.212 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.179 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.550 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.802 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.679 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.675 |
| SRR2868004 | Drought Stress (root) | 8.676 |
| SRR2967015 | Control (root) | 2.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.714 |
| SRR9715740 | Leaf | 7.409 |
| SRR9715741 | Leaf | 11.228 |
| SRR9715739 | Root | 1.093 |
| SRR9715742 | Root | 8.968 |
| SRR9715743 | Root | 7.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.187 |
| SRR8749028 | MeJA induced 9h | 3.746 |
| SRR8749029 | MeJA induced 9h | 2.109 |
| SRR8749030 | Uninduced | 3.897 |
| SRR8749031 | Uninduced | 1.062 |
| SRR8749032 | Uninduced | 0.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.880 |
| SRR8400027 | Control - Root | 5.635 |