Gene detail

Gene detail information of Glyur000640s00024121

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18290.1	0	zinc finger protein-related
NR	XP_004512911.1	0	PREDICTED: uncharacterized protein LOC101496502 [Cicer arietinum]
COG	YP_704968.1	4.00E-06	hypothetical protein RHA1_ro05029 [Rhodococcus jostii RHA1]
trEMBL	tr\|I1KIY9\|I1KIY9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G10400.1}

Sequence

Transcript Sequence

>Glyur000640s00024121.1
CGCATGTTGTCTTAAAANTTTTTTAATCTTATCGTCGTAAGCGTAAACCAAATTCATCTTTTCCGCTCGCTCCACCGAAGAAATAACGTTACTCTCTTACAATCCCTCACATAACAGAAAAAACTCACCATAACAAACAACCCTTTCTCTCTCTCTCACACACACAAAAACACGCACACCATTTTTTTGGTCACACAAATCTCACACACACACACACAACGACGAAGACTGAAGACCTAGAGAGAGAAAATTTTCCCGGAAAATCAACCTCCGAGAAAATTCTCCGGGAAAATAGAAAGAAAAGGAAAAAGGAAAAAAGAGCATGGCGACGCCGTTAACGGACGGAGGTGGAGGGGTGGCGGTGCTGTCGAATCGTGTGAGCAAGGTGGATTCCTCCTCCAATGGCGANGGTGGCGGTGGTGTCGGCTTCGACCGCTCCTCTTTATCGGAATCGCCAATTCTGATTTTCTCGTTCTTCCATAAAGCTATTAGGAATGAGCTCGATGCGCTTCACCGATTGGCCATGGCCTTTGCCACCGGAAACAACTCCGATATCCGCCCCCTCGTCGAACGCTACCATTTCCTCAGATCCATGTACAGGCACCACTCCAATGCCGAGGATGAGGTGATTTTTCCAGCTCTGGATAAGCGGGTGAAGAATGTTGCTAAGACATATTCTCTTGAACACAAGGGTGAAAGTGATCTTTTAGATCATCTGTTTGAGCTGTTAAACTCTTCCATCGATGATGATGAAAATTACCCAAAGGAGTTAGCATCTTGCACGGGAGCTCTGCAGACATCGGTTAGTCAACACATGGCTAAAGAGGAGCAGCAAGTATTTCCGCTGCTTATTGAGAAATTCTCCCTCGAGGAACAAGCATCTTTAGTTTGGCAGTTCCTTTGCAGTATTCCTGTGAATATGATGACAGAATTTCTTCCATGGCTTTCAACATCCATATCACCTGATGAATCTCAGGATTTACGGAAGTGCTTAAGCAAGATAGTGCCGGATGAAAAACTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTAGTGCTAACACAGTTGAAAATTGTGTAGATCATGCTCAGGTTCGATGTAGTCCTAGTCCTTTATCCCATCAGATTGGGAAAATAAAATGTGCATGCGAGTCCACTGCAACTGGGAAAAGAAAATATTCTGCATTTATCCTAGATGTTTCTGATACAATGGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCTATAAAAAAAGAGTTAAATGAGATAGCAGCGGAAACCAGAAAGATACAACACACTGAAGATTTTACTAATCTGTCAGCTTTTAATGAAAGGCTGCAATTCATTGCTGATGTTTTCATATTCCACAGTATTGCTGAGGACAAGGTCATTTTTCCAGCAGTAGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGTCTTTGATTGAAAGAATTCTAAGTGAAGGAGCAATATCTAGTTCAGAAGCTGAATTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATACAAAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGTTTCGAAAGGCAACGAGAACTTGTGTATGAAAGCTTGCGCATGATGCCTTTGAAATTGATTGAGCGTGTCCTGCCATGGTTCGTTGGATCATTAACTGAAGATGAAGCAGTGATGTTTCTGAAAAACATGCAATTGGCAGCTCCAGCAACGGATTATGCTTTAGTTACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAAATGGTCTGTGTTTGTCATCAAGTGCATCCGGTTGCTGTCCTGCTAAAAATATTTTTCGGTCTTCCTGTAATTGTGCTTCTGCATTGTCTGGTAAAGATTGCTCAGTATTTGTTGAATCAGATGGGACCCAAAGATCAGTCAAGCGAAACATGTTAGAGTTGCACAAAAATAGAGATGTCCCTAAAACTCCAGAAAATGGAGGTACCCAGAAACAATGTTGTGGTCCCAGGTCTTGTTGTGTGCCAGCTTTAGGAGTCAGCAGTAACAATTTGGGGCTGAGTTCGCTTTCTACAGTCAAGTCCTTACGCTCCTTGACTTTCACCTCTTCTGCCCCATCTCTTAATTCTAGTCTTTTCAATTGGGAAACAGACAGCAGCTCATGTGATAATGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAGGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTTGCGATGGTGATGAAACAACTATTCGGCAATTTACTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGACGACATAGTTTTTCCTGCATTGGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCTTACACGCTGGACCATAAACAGGAAGAAAAATTATTCGAAGATATTTCTTGCGTTCTTTCTGAGCTTTCTGTCCTTCACGAAACATTGCAAAGGACCCATATGTCAGAGGATTTAAGTGAAAGTAATTTTGGAATTTCTGATGCAGATGATAATGATAATATCAGAAAGTACAATGAGCTTGCTACTAAGCTTCAAGGGATGTGCAAATCTATACGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCTCGAGCTCTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACACAAGATGAACAGAGCAAAATGATGGACACATGGAAACAGGCAACTAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAGAGTCCAGAATCTATATCACAGACAGAAACATCTGAGCATAGCACTTCTCAAAGAGGTGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAATCAGAGTGAACTTGAGTCAGAAATCCGGAAGGTTTATCGTGACTCGACTCTTGATCCAAGGAGAAAGGCATATCTAGTGCAGAATCTGATGACAAGTCGCTGGATAGCTTCCCAACAGAATTTACCTAAAGCTCAATCTGGGGAATCATCTAATAAACAAATAGAAGGATGCTCACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGCTTGTTGTGGCAAATTATTTACATGCAGATTTTGTCATGACAATGCTAGTGATCACTCCATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCGCTGCCGGACAATACAGCCAGTTGGGCCTATATGCATGTCGCCTTCATGTAATGGACTTTCAATGGCAATGTACTATTGTAACATCTGCAAATTTTTTGATGATGAAAGGAATGTTTATCATTGCCCATATTGCAATATATGCCGTGTTGGACAAGGGCTTGGCATTGATTATTTTCATTGTATGAAATGTAATTGTTGCCTGGGGATAAAATCAACGTCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAACTGCCCAATTTGCGTTGACGACTTGTTCACATCAAGTGCAACGGTCAGAGCTCTACCTTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGCAGTCACTACACGTGTCCAATCTGCAGCAAGTCACTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCATTGTTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGAAATACTCTGCCATGACTGTGATCGAAAGGGCACTTCGCGCTTCCACTGGTTATATCACAAATGTGAATTTTGCGGCTCATATAATACCCGGATACTAGATAGTGATAAACTAATGAAATCGAGTGGAGTAACA

Protein Sequence

>Glyur000640s00024121.1
MATPLTDGGGGVAVLSNRVSKVDSSSNGXGGGGVGFDRSSLSESPILIFSFFHKAIRNELDALHRLAMAFATGNNSDIRPLVERYHFLRSMYRHHSNAEDEVIFPALDKRVKNVAKTYSLEHKGESDLLDHLFELLNSSIDDDENYPKELASCTGALQTSVSQHMAKEEQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMTEFLPWLSTSISPDESQDLRKCLSKIVPDEKLLQKVIFTWMEGRSSANTVENCVDHAQVRCSPSPLSHQIGKIKCACESTATGKRKYSAFILDVSDTMGTHPIDEILLWHNAIKKELNEIAAETRKIQHTEDFTNLSAFNERLQFIADVFIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRSLIERILSEGAISSSEAEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFERQRELVYESLRMMPLKLIERVLPWFVGSLTEDEAVMFLKNMQLAAPATDYALVTLFSGWACKARKNGLCLSSSASGCCPAKNIFRSSCNCASALSGKDCSVFVESDGTQRSVKRNMLELHKNRDVPKTPENGGTQKQCCGPRSCCVPALGVSSNNLGLSSLSTVKSLRSLTFTSSAPSLNSSLFNWETDSSSCDNGSAERPIDTIFKFHKAIRKDLEYLDVESGKLCDGDETTIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSELSVLHETLQRTHMSEDLSESNFGISDADDNDNIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQSKMMDTWKQATKNTMFNEWLNECLKESPESISQTETSEHSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNQSELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIASQQNLPKAQSGESSNKQIEGCSPSFRDPEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATLEMMCMRCRTIQPVGPICMSPSCNGLSMAMYYCNICKFFDDERNVYHCPYCNICRVGQGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICVDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQEILCHDCDRKGTSRFHWLYHKCEFCGSYNTRILDSDKLMKSSGVT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00640	66132	90638	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000640s00024121.1	PF01814.18	Hemerythrin	53	176	8.70E-18
Glyur000640s00024121.1	PF01814.18	Hemerythrin	302	436	8.40E-09
Glyur000640s00024121.1	PF01814.18	Hemerythrin	644	807	2.60E-06
Glyur000640s00024121.1	PF05495.7	zf-CHY	990	1067	6.30E-17
Glyur000640s00024121.1	PF13639.1	zf-RING_2	1118	1160	1.40E-09
Glyur000640s00024121.1	PF14599.1	zinc_ribbon_6	1165	1223	1.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.973
SRR1783600	control	5.975
SRR1783602	moderate drought stress	7.258
SRR1811619	moderate drought stress	7.113

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.199
DRR006520	Root Summer glycyrrhizin high producing strain	11.075
DRR006521	Root Winter glycyrrhizin high producing strain	15.115
DRR006522	Root Winter glycyrrhizin high producing strain	14.669
DRR006523	Root Summer glycyrrhizin low producing strain	9.149
DRR006524	Root Summer glycyrrhizin low producing strain	9.267
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.516
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.378

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.633
SRR2868004	Drought Stress (root)	16.715
SRR2967015	Control (root)	19.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.803
SRR9715740	Leaf	8.368
SRR9715741	Leaf	10.555
SRR9715739	Root	1.162
SRR9715742	Root	10.804
SRR9715743	Root	8.278

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.740
SRR8749028	MeJA induced 9h	27.024
SRR8749029	MeJA induced 9h	14.388
SRR8749030	Uninduced	29.384
SRR8749031	Uninduced	41.514
SRR8749032	Uninduced	23.273

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.582
SRR8400027	Control - Root	9.335