Gene detail information of Glyur000640s00024115.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48790.1 | 3.00E-167 | associated molecule with the SH3 domain of STAM 1 |
| NR | XP_003620442.1 | 0 | STAM-binding protein [Medicago truncatula] |
| Swissprot | tr|Q8VYB5|AMSH1_ARATH | 0 | AMSH-like ubiquitin thioesterase 1 |
| trEMBL | tr|G7KN01|G7KN01_MEDTR | 0 | AMSH-like ubiquitin thioesterase {ECO:0000313|EMBL:AES76660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00640 | 42808 | 48308 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11866 | STAMBP, AMSH | EC:3.4.19.12 | Endocytosis | map04144 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000640s00024115.1 | PF08969.6 | USP8_dimer | 73 | 161 | 1.10E-11 |
| Glyur000640s00024115.1 | PF01398.16 | JAB | 397 | 502 | 1.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.319 |
| SRR1783600 | control | 21.504 |
| SRR1783602 | moderate drought stress | 17.955 |
| SRR1811619 | moderate drought stress | 17.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.171 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.194 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.173 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.384 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.439 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.200 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.689 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.304 |
| SRR2868004 | Drought Stress (root) | 51.572 |
| SRR2967015 | Control (root) | 49.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.056 |
| SRR9715740 | Leaf | 16.521 |
| SRR9715741 | Leaf | 26.236 |
| SRR9715739 | Root | 5.963 |
| SRR9715742 | Root | 16.737 |
| SRR9715743 | Root | 16.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.463 |
| SRR8749028 | MeJA induced 9h | 60.146 |
| SRR8749029 | MeJA induced 9h | 54.990 |
| SRR8749030 | Uninduced | 57.178 |
| SRR8749031 | Uninduced | 125.013 |
| SRR8749032 | Uninduced | 91.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.812 |
| SRR8400027 | Control - Root | 34.516 |