Gene detail

Gene detail information of Glyur000640s00024114

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00960.1	1.00E-76	Protein kinase superfamily protein
NR	XP_003620444.1	0	Cysteine-rich receptor-like protein kinase [Medicago truncatula]
COG	YP_007203562.1	9.00E-17	WD40 repeat-containing protein [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|O23082\|Y4960_ARATH	5.00E-91	Putative receptor-like protein kinase At4g00960
trEMBL	tr\|G7KN03\|G7KN03_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES76662.1}

Sequence

Transcript Sequence

>Glyur000640s00024114.1
AAAAAAAAAAGGTAAATTCACCTGTCTCTGTCTCCATTTGAATTAGTGAAATTCAACGTGCTTCCAACCGGGAAGAGTCTAGTCAGTCTACGACCTTTACCAAGNAAAAACAAAAATTTAAAAAAATGTTAAAATTTAAAAAATGTCAAAATTAACAAGTAACTGCAGGAGTAGGTATCACCTAAATTTCGTGCAAGACCAGATCAATTAATAGGACTTAGTAGTTGTTGTTGACGAGGAACATGTTTGATCATTGTTGAGTCGAGGCATCTAAAGAAGGAGATGGAAGAGGAGGAGGAAAAGCAACACTATTATTATCACCGGACAGTGTGTTGTTNTTGATAACTTATTATAATTATATTCGTGTTGTTGCCACGTGGGATTTCGCGCTTCTCACAAAACGACGTCGTCTCCCATATGGCGTTCTTTTCGCGGCTGTGCAATTGCCTCCTGAAGAGGGGCGGTGCTGCCTCCGACGACGGCGGCGGCGGCGAAGACGACACCAGCGACGGCGGAGACTCTTCCAACCTCCTATTCGACCTCCACACGCTCCAGCTCGCTGCCAATTTCTTCTCCGACCTAAACTTGCTTGGTCGTGGAGGGTTTGGTCCCGTTTTCAAGGGATTGATGCCAAACGGTCAAGAAGTGGCTATTAAGAAGCTGTCATTGGAATCTAGACAAGGAGTTAAAGAATTTACCAATGAAGTCAAGCTATTACTAAGAATTCAACACAAGAACTTGGTTATGTTACTGGGTTGTTGTGCAGAAGGACCGGAAAAGATGCTTATCTATGAAATAGTTACAGGCGTGGCAAGAGGGCTTCTCTACCTGCATGAAGAGGCCCCAGAAAGAATTATTCACAGAGACATCAAAGCTAGTAACATATTGCTGGATGAAAAATTAAATCCAAAAATTTCAGACTTTGGCTTGGCACGGCTATTTCCTGGAGAGGACACTCATGCATCCTTAATTATGCTTTTTGTATTTGATGAATCCAGTGGTTACATGGCCCCTGAATATGCAATGCGTGGATATCTGTCTGTAAAGACTGATGTTTTCAGTTATGGAGTCTTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCATGACGTGCATCTTGGTGCAGAAAAGGCTGATCTCTTAAACTATGCATGGATGCTTTATCAAGGAGGGAAGACTATGGATTTAATAGACCCAACTCTTGGTAAATACAATGGTGATGAGGCTGCAATGTGCATTCAGCTGGGTCTGTTGTGCTGTCAAGCAAGGGTAACTGAGAGACCTGACATGAATTCTGTTCATCTCATGCTCTCAAGTGATTCCTTCACTTTGCCAAGACCAAGTAAACCAGGAATTCAGGGTGGTAGTAGTCTTGTTGAGGACTATTCTAGAAATTCTATCTCTACTTCTTCTTTTGATGAAGGAAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00640	36984	40814	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000640s00024114.1	PF00069.20	Pkinase	124	229	1.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.256
SRR1783600	control	2.845
SRR1783602	moderate drought stress	3.986
SRR1811619	moderate drought stress	3.787

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.386
DRR006520	Root Summer glycyrrhizin high producing strain	2.992
DRR006521	Root Winter glycyrrhizin high producing strain	6.987
DRR006522	Root Winter glycyrrhizin high producing strain	6.544
DRR006523	Root Summer glycyrrhizin low producing strain	6.244
DRR006524	Root Summer glycyrrhizin low producing strain	6.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.159
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.142

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.060
SRR2868004	Drought Stress (root)	27.274
SRR2967015	Control (root)	23.159

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.874
SRR9715740	Leaf	15.335
SRR9715741	Leaf	19.561
SRR9715739	Root	2.995
SRR9715742	Root	6.087
SRR9715743	Root	5.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.037
SRR8749028	MeJA induced 9h	28.792
SRR8749029	MeJA induced 9h	28.525
SRR8749030	Uninduced	69.422
SRR8749031	Uninduced	121.154
SRR8749032	Uninduced	61.491

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.733
SRR8400027	Control - Root	16.710