Gene detail information of Glyur000639s00029935 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15910.1 | 6.00E-147 | XH/XS domain-containing protein |
| NR | XP_003530299.1 | 0 | PREDICTED: structural maintenance of chromosomes protein 2-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9S9P3|FDM1_ARATH | 0 | Factor of DNA methylation 1 {ECO:0000303|PubMed:22302148} |
| trEMBL | tr|I1KGU5|I1KGU5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G02740.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00639 | 104716 | 108609 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000639s00029935.1 | PF03470.9 | zf-XS | 42 | 84 | 3.00E-22 |
| Glyur000639s00029935.1 | PF03468.9 | XS | 115 | 217 | 1.40E-22 |
| Glyur000639s00029935.1 | PF03469.9 | XH | 489 | 620 | 1.80E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.018 |
| SRR1783600 | control | 0.019 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.054 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.770 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.792 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.056 |
| SRR2868004 | Drought Stress (root) | 0.122 |
| SRR2967015 | Control (root) | 0.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.373 |
| SRR8749028 | MeJA induced 9h | 5.243 |
| SRR8749029 | MeJA induced 9h | 16.141 |
| SRR8749030 | Uninduced | 2.300 |
| SRR8749031 | Uninduced | 3.195 |
| SRR8749032 | Uninduced | 2.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.057 |
| SRR8400027 | Control - Root | 0.080 |