Gene detail

Gene detail information of Glyur000637s00026809

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54090.1	2.00E-166	DNA mismatch repair protein MutS, type 2
NR	XP_004490532.1	0	PREDICTED: mutS2 protein-like isoform X2 [Cicer arietinum]
COG	YP_007108006.1	9.00E-87	MutS2 family protein [Geitlerinema sp. PCC 7407]
trEMBL	tr\|G7K652\|G7K652_MEDTR	0	DNA mismatch repair MUTS family protein {ECO:0000313\|EMBL:AES98436.2}

Sequence

Transcript Sequence

>Glyur000637s00026809.1
GTAGTAGTAATCCCACTACTACAAGCTACAACTGTCGCGGTACAAGTGTTGGTCACTTCCTCATATCAAAACCATAATTTTGTGCAATTTAATCTTGAGAAACCCATTTGAAACCATTGGTGGAGGACCAATAAAAATGTTATCTTGCACCTTAGCCATATCTGTTTTCCCCATAATAACCATTAACAAACTGAGGCTGAGACAGCGGCAAACTGTGGTGGCAGCGTCCATTCACGATGACAGCCTCAGAGTGCTCGAATGGGATAAGCTCTGCGATTTGGTCTCTTCCTTCGCCACCACTTCCTTGGGCCGTCAATCCCTCAAGGTGAAAAGTGCCATTCAAAATGCCCAGAGAAGCGTACCTGTGACTGGCTATGAGGCAAGGGCCATTTTGGCTCTTCTGCAGTGTGCTGATACCTTGCAGGGTGATCTCAAAGCTGCAATTAAGCGAGACAAAGATTGGTATAATCGTTTCATGCCTCTTACAGAAGTGAGTCCAGAGCTTAAACAGTCACGTCGACANTTGCAAGCACTTGAGAGAAAGATGCAACAGTTAATGGACAGCTTAATCAGGAATGAAAGGAGTGAAACATCAAATCTTGAAGTGAATAATGTTAATGGCAGATGGTGCATAAGAGTGGATTCTGGACAGAAAACGAGTTTTAAGGGTCTATTGTTGTCCAGTGGTTCAGGAGGTGGAAGTACCTTAGAGCCACTTTCTGCTATTCCCTTAAATGATGAGTTGCAGCGAGCAAGAAGTTTGGTGGCAAAGGCTGAGGCAGATGTGCTCTTGACATTAACCAAAAAGATGCAGCTGGACCTTGACNATATTGAAAAGATATTAAACAGTTTGGTTCANCTAGATGTGATTAATGCTCGTGCTACGTATGGTCTTTCATTTGGAGGATCAAGTCCTCATATTTTTCTGCCAGATAGATATGGCTCTTCTACCGCTGAGTCNTTCTCAACAAGGAAAGACAGTTCCAATGGACTGTTACCCAACAATACGGAATGGACATTGTATCTGCCGAAAGCTTATNATCCTTTATTGCTCCAGAGTCATAGGGAAAATTCACAGAAGGCCAATGTTGCTGCACTGGACAAAGCCCAACCACAGCCTGTACCGGTTGATTTTTTGGTACCTAATAAAACTCGTGTTATAGTTATTACTGGCCCTAATACTGGCGGTCTCTATGTTCTTGCTTCTGAATCTGTGCAAATTCCTTGGTTTGATTCTGTTTTTGCTGACATCGGTGATGAGCAGTCCTTATCACAGTCTCTGTCTACATTCTCTGGCCACTTGAAGCAGATTAGTGTTGGTGCAGGAACAAACCCCCTTGAAGGAGCAGCACTAGGAATGTCATTATTGGAATCTTTTGCCCAAGACGGTTGTTTGTTGACTATAGCTACGACTCATCATGGTGAACTGAAAACCCTGAAATACAGTAATGAGGCGTTTGAAAATGCATGCATGGAGTTTGATGAAGTGAATTTGAAGCCAACTTACAAGATTCTTTGGGGCATACCAGGTCGCTCAAACGCAATCAATATAGCCGAGAGGTTGGGTCTGCCATCCGTTGTTGTAGATACTGCTCGTAGGTTGTATGGTTCTGCTAGTGCAGAGATTGATGAGGTAATAACTGATATGGAAAAGTTAAAACAAGATTATCAAGAGCTATTGGCTGAAGCGAATCATTATCTGATGCAATCCAGAGAACTTCACAGTAGTCTATTGGACACCAGAAGGAAGATAATGGGACATAGTGCTAGTCTAAGATTTAAAAAAATGAGAGATGTATCCGGCGCTGCAGCGATGGCAAGATCCATCCTTCACAAGAAGGTGAGGGAGCTGGTTGCATCAGCTAAGCAAACNTCACAGCACAATAAAGCCATTAAGAGCTCTCATTCATCATCAACGGGCAACCTCCATACCACAGCAGATAAGAAAGAACCTACTATCACAGATACAAATAGGTCTGTGCTTCCCAAGGTTGGTGATGTAATACATGTCTNTTCCCTTGGGAAAAAAGTGACCGTTTTAAAAGTGAATTCGTCCAAAGGAGAACTTGTAGTTCAAGCTGGAATCATGAAGTTGAAGCTAAAATTAACTGACATTCACAGATAGTAGGAATTAGGAAATCATGGCCATGGTCATAAATGAGGAAAGTGTGTATTGAAGATGCTATCTTATGCTCTGATGTGAGATAAAAACAAAGGTGGATGAACTGTTTCTTGATTTAGCCTCATGTGTCAAGATTCAAGAACAACAGTTTTACATTGCCATCAACAATACCAATAGCTGATNTGCTAATTGTGCAAGAATGCAGTGAAGCTGCCAAAAAAAGAAAACAAACAAATCAGTTAAAGAAATTTATGAGCAACATGCTTTGTGGAAATAAAACAATTACAAGTATTCAGAAACATGGCTTTTTAGCACGGTTGGAGGTGGAATATCNCTTCACCCTCTTCAAGAAAACACTAACGGATTCCTTTTGTGTACTTAAGTTGGGTACCTTTAATTAAGAAAATTGCTCCCCACCCAAAAAAAAAATATCAATTACTATTTTACTATATAAAAAATGTAGGTCCTAATTGTGGTATGTGTCATCTCCCATGCTAGGACACGTGTCACCTCTCAAGTCTCTTTATTTCTTGTCAAAGTTGTTTGATTTGTTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00637	54985	65937	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006298 mismatch repair

GO:0045910 negative regulation of DNA recombination

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0030983 mismatched DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000637s00026809.1	PF00488.16	MutS_V	357	489	1.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.410
SRR1783600	control	2.339
SRR1783602	moderate drought stress	4.831
SRR1811619	moderate drought stress	4.650

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.809
DRR006520	Root Summer glycyrrhizin high producing strain	8.680
DRR006521	Root Winter glycyrrhizin high producing strain	4.058
DRR006522	Root Winter glycyrrhizin high producing strain	4.273
DRR006523	Root Summer glycyrrhizin low producing strain	7.793
DRR006524	Root Summer glycyrrhizin low producing strain	7.525
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.212
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.094

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.253
SRR2868004	Drought Stress (root)	3.358
SRR2967015	Control (root)	4.009

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.578
SRR9715740	Leaf	8.273
SRR9715741	Leaf	5.022
SRR9715739	Root	0.318
SRR9715742	Root	1.777
SRR9715743	Root	1.004

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.755
SRR8749028	MeJA induced 9h	1.874
SRR8749029	MeJA induced 9h	1.310
SRR8749030	Uninduced	0.862
SRR8749031	Uninduced	0.471
SRR8749032	Uninduced	0.604

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.464
SRR8400027	Control - Root	3.743