Gene detail information of Glyur000637s00026807 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04635.1 | 3.00E-52 | ribonuclease P family protein / Rpp14 family protein |
| NR | NP_001237165.1 | 2.70E-90 | uncharacterized protein LOC100527772 [Glycine max] |
| Swissprot | tr|Q6AWV1|POP5_ARATH | 2.00E-65 | Probable ribonuclease P/MRP protein subunit POP5 |
| trEMBL | tr|C6T5D2|C6T5D2_SOYBN | 1.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G36760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00637 | 43256 | 45770 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03537 | POP5 | EC:3.1.26.5 | RNA transport | map03013 |
| Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000637s00026807.1 | PF01900.14 | RNase_P_Rpp14 | 7 | 117 | 4.10E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.930 |
| SRR1783600 | control | 2.055 |
| SRR1783602 | moderate drought stress | 1.925 |
| SRR1811619 | moderate drought stress | 1.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.633 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.501 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.280 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.834 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.385 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.399 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.515 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.751 |
| SRR2868004 | Drought Stress (root) | 7.179 |
| SRR2967015 | Control (root) | 7.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.421 |
| SRR9715740 | Leaf | 3.996 |
| SRR9715741 | Leaf | 4.737 |
| SRR9715739 | Root | 2.873 |
| SRR9715742 | Root | 6.553 |
| SRR9715743 | Root | 4.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.647 |
| SRR8749028 | MeJA induced 9h | 10.345 |
| SRR8749029 | MeJA induced 9h | 13.811 |
| SRR8749030 | Uninduced | 5.631 |
| SRR8749031 | Uninduced | 6.865 |
| SRR8749032 | Uninduced | 6.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.639 |
| SRR8400027 | Control - Root | 6.720 |