Gene detail information of Glyur000637s00026805 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24620.1 | 9.00E-45 | Pathogenesis-related thaumatin superfamily protein |
| NR | AIR93918.1 | 7.26E-86 | thaumatin [Cicer arietinum] |
| Swissprot | tr|Q9FSG7|TP1A_MALDO | 2.00E-42 | Thaumatin-like protein 1a (Precursor) |
| trEMBL | tr|A0A089YMU0|A0A089YMU0_CICAR | 3.00E-86 | Thaumatin {ECO:0000313|EMBL:AIR93918.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00637 | 36233 | 38059 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000637s00026805.1 | PF00314.12 | Thaumatin | 6 | 140 | 8.30E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.836 |
| SRR1783600 | control | 0.719 |
| SRR1783602 | moderate drought stress | 0.536 |
| SRR1811619 | moderate drought stress | 0.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.809 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.169 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.919 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.374 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.129 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.574 |
| SRR2868004 | Drought Stress (root) | 4.262 |
| SRR2967015 | Control (root) | 3.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.998 |
| SRR9715740 | Leaf | 0.293 |
| SRR9715741 | Leaf | 0.374 |
| SRR9715739 | Root | 0.161 |
| SRR9715742 | Root | 1.677 |
| SRR9715743 | Root | 0.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.130 |
| SRR8749028 | MeJA induced 9h | 0.133 |
| SRR8749029 | MeJA induced 9h | 0.228 |
| SRR8749030 | Uninduced | 0.146 |
| SRR8749031 | Uninduced | 0.179 |
| SRR8749032 | Uninduced | 0.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.067 |
| SRR8400027 | Control - Root | 1.179 |